Variant report

Variant	rs1364379
Chromosome Location	chr13:70428470-70428471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs12427920	0.83[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12428011	1.00[YRI][hapmap]
rs12867164	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12867534	0.90[CHB][hapmap];0.92[JPT][hapmap]
rs12867655	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12877094	0.90[CHB][hapmap];0.91[CHD][hapmap];0.93[JPT][hapmap]
rs1364380	0.99[ASN][1000 genomes]
rs1424312	0.93[ASN][1000 genomes]
rs1424313	0.90[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1424314	0.93[ASN][1000 genomes]
rs17085527	0.94[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17085529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17085532	0.98[ASN][1000 genomes]
rs17085534	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17085536	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17085537	0.96[ASN][1000 genomes]
rs17085538	0.96[ASN][1000 genomes]
rs17085541	0.96[ASN][1000 genomes]
rs17736182	0.88[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17798262	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1991073	1.00[YRI][hapmap]
rs1991074	1.00[YRI][hapmap]
rs1991075	1.00[YRI][hapmap]
rs1991076	0.83[AFR][1000 genomes]
rs2113360	1.00[YRI][hapmap]
rs2113361	1.00[YRI][hapmap]
rs2113362	1.00[YRI][hapmap]
rs2161757	1.00[YRI][hapmap]
rs2161759	1.00[YRI][hapmap]
rs2161760	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2194362	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2325246	0.98[ASN][1000 genomes]
rs2911508	1.00[YRI][hapmap]
rs2911509	1.00[YRI][hapmap]
rs2911514	1.00[YRI][hapmap]
rs2911515	1.00[YRI][hapmap]
rs2911516	1.00[YRI][hapmap]
rs2911517	1.00[YRI][hapmap]
rs2911519	0.86[LWK][hapmap];1.00[YRI][hapmap]
rs2911521	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2911522	0.83[AFR][1000 genomes]
rs2911523	0.83[AFR][1000 genomes]
rs2911524	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3012100	1.00[YRI][hapmap]
rs3012102	1.00[YRI][hapmap]
rs3012104	1.00[YRI][hapmap]
rs3012105	0.91[YRI][hapmap]
rs3012106	0.91[YRI][hapmap]
rs3012107	0.86[LWK][hapmap];1.00[YRI][hapmap]
rs3012108	0.86[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs3012109	0.81[AFR][1000 genomes]
rs3012110	0.85[YRI][hapmap]
rs3012111	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs34484817	0.93[ASN][1000 genomes]
rs35421658	0.93[ASN][1000 genomes]
rs35894775	0.96[ASN][1000 genomes]
rs61963756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963757	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963758	0.97[ASN][1000 genomes]
rs61965660	0.96[ASN][1000 genomes]
rs66953333	0.97[ASN][1000 genomes]
rs71429622	0.89[ASN][1000 genomes]
rs7316942	1.00[YRI][hapmap]
rs7318606	1.00[YRI][hapmap]
rs7332909	0.91[ASN][1000 genomes]
rs7981986	0.89[ASN][1000 genomes]
rs7985162	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs7998496	0.93[ASN][1000 genomes]
rs7999428	0.93[ASN][1000 genomes]
rs7999602	0.93[ASN][1000 genomes]
rs8002832	0.90[ASN][1000 genomes]
rs973540	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900483	chr13:70254555-70464234	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv832643	chr13:70324440-70486661	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv900487	chr13:70327693-70548643	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1041207	chr13:70347748-70473605	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv530724	chr13:70393680-71164323	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1045918	chr13:70409675-70615997	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70426000-70430400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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