Variant report

Variant	rs12427920
Chromosome Location	chr13:70433321-70433322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12428267	0.82[YRI][hapmap]
rs12430318	0.82[YRI][hapmap]
rs12867164	1.00[JPT][hapmap]
rs12867534	0.80[CHB][hapmap];0.92[JPT][hapmap]
rs12867655	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12877094	0.81[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];0.93[JPT][hapmap]
rs1364379	0.83[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1364380	0.88[ASN][1000 genomes]
rs1424312	0.94[ASN][1000 genomes]
rs1424313	0.81[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1424314	0.94[ASN][1000 genomes]
rs17085527	0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs17085529	0.87[ASN][1000 genomes]
rs17085532	0.89[ASN][1000 genomes]
rs17085534	0.87[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17085536	0.81[CEU][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17085537	0.90[ASN][1000 genomes]
rs17085538	0.90[ASN][1000 genomes]
rs17085541	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17736182	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17798262	0.87[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2161760	0.87[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2194362	0.81[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2325246	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2911524	0.85[CHD][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs34484817	0.94[ASN][1000 genomes]
rs35421658	0.94[ASN][1000 genomes]
rs35894775	0.90[ASN][1000 genomes]
rs61963756	0.87[ASN][1000 genomes]
rs61963757	0.87[ASN][1000 genomes]
rs61963758	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61965660	0.90[ASN][1000 genomes]
rs66953333	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71429622	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7332909	0.92[ASN][1000 genomes]
rs7981986	0.90[ASN][1000 genomes]
rs7985162	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs7998496	0.94[ASN][1000 genomes]
rs7999428	0.94[ASN][1000 genomes]
rs7999602	0.94[ASN][1000 genomes]
rs8002832	0.91[ASN][1000 genomes]
rs9592662	0.82[YRI][hapmap]
rs973540	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900483	chr13:70254555-70464234	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv832643	chr13:70324440-70486661	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv900487	chr13:70327693-70548643	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1041207	chr13:70347748-70473605	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv530724	chr13:70393680-71164323	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1045918	chr13:70409675-70615997	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70431200-70435800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:70431400-70433400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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