Variant report

Variant	rs17085529
Chromosome Location	chr13:70428893-70428894
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12427920	0.87[ASN][1000 genomes]
rs1364379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364380	0.99[ASN][1000 genomes]
rs1424312	0.93[ASN][1000 genomes]
rs1424313	0.93[ASN][1000 genomes]
rs1424314	0.93[ASN][1000 genomes]
rs17085527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17085532	0.98[ASN][1000 genomes]
rs17085534	0.97[ASN][1000 genomes]
rs17085536	0.96[ASN][1000 genomes]
rs17085537	0.96[ASN][1000 genomes]
rs17085538	0.96[ASN][1000 genomes]
rs17085541	0.96[ASN][1000 genomes]
rs17736182	0.90[ASN][1000 genomes]
rs17798262	0.96[ASN][1000 genomes]
rs1991076	0.83[AFR][1000 genomes]
rs2161760	0.98[ASN][1000 genomes]
rs2194362	0.93[ASN][1000 genomes]
rs2325246	0.98[ASN][1000 genomes]
rs2911521	0.81[AFR][1000 genomes]
rs2911522	0.83[AFR][1000 genomes]
rs2911523	0.83[AFR][1000 genomes]
rs2911524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3012108	0.83[AFR][1000 genomes]
rs3012109	0.81[AFR][1000 genomes]
rs3012111	0.83[AFR][1000 genomes]
rs34484817	0.93[ASN][1000 genomes]
rs35421658	0.93[ASN][1000 genomes]
rs35894775	0.96[ASN][1000 genomes]
rs61963756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963757	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963758	0.97[ASN][1000 genomes]
rs61965660	0.96[ASN][1000 genomes]
rs66953333	0.97[ASN][1000 genomes]
rs71429622	0.89[ASN][1000 genomes]
rs7332909	0.91[ASN][1000 genomes]
rs7981986	0.89[ASN][1000 genomes]
rs7998496	0.93[ASN][1000 genomes]
rs7999428	0.93[ASN][1000 genomes]
rs7999602	0.93[ASN][1000 genomes]
rs8002832	0.90[ASN][1000 genomes]
rs973540	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900483	chr13:70254555-70464234	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv832643	chr13:70324440-70486661	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv900487	chr13:70327693-70548643	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1041207	chr13:70347748-70473605	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv530724	chr13:70393680-71164323	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1045918	chr13:70409675-70615997	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70426000-70430400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:70428600-70430200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links