Variant report

Variant	rs74092662
Chromosome Location	chr1:77935405-77935406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11800652	0.90[ASN][1000 genomes]
rs11810135	0.90[ASN][1000 genomes]
rs12564592	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12564604	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12566093	0.90[ASN][1000 genomes]
rs12568374	0.90[ASN][1000 genomes]
rs12568376	0.90[ASN][1000 genomes]
rs2245189	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2647496	0.80[ASN][1000 genomes]
rs55848622	0.90[ASN][1000 genomes]
rs56910202	0.90[ASN][1000 genomes]
rs57744162	0.90[ASN][1000 genomes]
rs57754896	0.90[ASN][1000 genomes]
rs57940344	0.90[ASN][1000 genomes]
rs58143971	0.82[ASN][1000 genomes]
rs58397190	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58958142	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59029032	0.90[ASN][1000 genomes]
rs59043705	0.90[ASN][1000 genomes]
rs59076612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59361407	0.90[ASN][1000 genomes]
rs59623467	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59913458	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60207382	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60645967	0.90[ASN][1000 genomes]
rs61080952	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61360507	0.84[AFR][1000 genomes]
rs61553470	0.90[ASN][1000 genomes]
rs61575581	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6664497	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6680677	0.83[ASN][1000 genomes]
rs74090603	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74090608	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74090614	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74090617	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74090618	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74090619	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74092623	0.90[ASN][1000 genomes]
rs74092624	0.90[ASN][1000 genomes]
rs74092625	0.90[ASN][1000 genomes]
rs74092627	0.90[ASN][1000 genomes]
rs74092641	0.90[ASN][1000 genomes]
rs74092642	0.90[ASN][1000 genomes]
rs74092644	0.90[ASN][1000 genomes]
rs74092645	0.90[ASN][1000 genomes]
rs74092649	0.90[ASN][1000 genomes]
rs74092650	0.90[ASN][1000 genomes]
rs74092651	0.90[ASN][1000 genomes]
rs74092654	0.90[ASN][1000 genomes]
rs74092655	0.90[ASN][1000 genomes]
rs74092659	0.90[ASN][1000 genomes]
rs74092660	0.90[ASN][1000 genomes]
rs7524107	0.90[ASN][1000 genomes]
rs7532905	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005183	chr1:77728990-77949309	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv535010	chr1:77728990-77949309	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv932557	chr1:77730247-77958687	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1003714	chr1:77756861-77949309	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv462095	chr1:77903611-77951460	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv546592	chr1:77903611-77951460	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77913200-77937000	Weak transcription	Primary T cells from cord blood	blood
2	chr1:77913200-77968400	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:77914600-77955600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:77929400-77935800	Enhancers	Brain Cingulate Gyrus	brain
5	chr1:77930200-77938000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr1:77930400-77935600	Enhancers	Brain Angular Gyrus	brain
7	chr1:77931400-77935600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr1:77932800-77935600	Enhancers	Brain Substantia Nigra	brain
9	chr1:77933000-77935600	Enhancers	Fetal Stomach	stomach
10	chr1:77933400-77935600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:77933400-77935600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:77933600-77935800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr1:77933600-77935800	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr1:77933600-77944400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:77934200-77939000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:77934200-77948800	Weak transcription	Right Atrium	heart
17	chr1:77934600-77939000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:77934600-77955200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:77934800-77935600	Enhancers	Hela-S3	cervix
20	chr1:77934800-77938800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:77934800-77939000	Weak transcription	Osteobl	bone
22	chr1:77934800-77939400	Weak transcription	HSMMtube	muscle
23	chr1:77935000-77937000	Weak transcription	NHDF-Ad	bronchial
24	chr1:77935000-77939400	Weak transcription	Brain Anterior Caudate	brain
25	chr1:77935200-77935800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:77935200-77936200	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr1:77935200-77939000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr1:77935400-77935800	Strong transcription	HSMM	muscle
29	chr1:77935400-77938400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:77935400-77939000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr1:77935400-77939000	Weak transcription	NHLF	lung

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