Variant report

Variant	rs74096838
Chromosome Location	chr12:58696807-58696808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55808020	1.00[AFR][1000 genomes]
rs60847559	1.00[AFR][1000 genomes]
rs74096840	1.00[AFR][1000 genomes]
rs74096850	1.00[AFR][1000 genomes]
rs74096858	1.00[AFR][1000 genomes]
rs74096859	1.00[AFR][1000 genomes]
rs74096860	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58695600-58697000	Enhancers	Fetal Intestine Small	intestine
2	chr12:58695600-58697000	Enhancers	A549	lung
3	chr12:58696200-58697000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr12:58696400-58697000	Enhancers	Fetal Lung	lung
5	chr12:58696800-58701000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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