Variant report

Variant	rs74096850
Chromosome Location	chr12:58708487-58708488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:58706895..58709674-chr12:58716044..58718187,2	MCF-7	breast:
2	chr12:58333957..58336055-chr12:58707548..58710144,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166896	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55808020	1.00[AFR][1000 genomes]
rs60847559	1.00[AFR][1000 genomes]
rs74096838	1.00[AFR][1000 genomes]
rs74096840	1.00[AFR][1000 genomes]
rs74096858	1.00[AFR][1000 genomes]
rs74096859	1.00[AFR][1000 genomes]
rs74096860	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv730	chr12:58698792-58759096	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58705400-58709000	Enhancers	HUVEC	blood vessel
2	chr12:58705400-58710000	Weak transcription	Fetal Intestine Large	intestine
3	chr12:58706200-58709200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr12:58706200-58709400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr12:58706400-58709000	Enhancers	Osteobl	bone
6	chr12:58706600-58708600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:58706800-58708600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr12:58706800-58709000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr12:58706800-58709000	Enhancers	NHDF-Ad	bronchial
10	chr12:58706800-58709200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:58707000-58708600	Enhancers	HSMM	muscle
12	chr12:58707000-58708800	Enhancers	HMEC	breast
13	chr12:58707400-58709200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr12:58707400-58709200	Enhancers	NH-A	brain
15	chr12:58708000-58708600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr12:58708000-58708800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr12:58708000-58708800	Enhancers	NHLF	lung
18	chr12:58708200-58708600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr12:58708200-58709000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr12:58708200-58709000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr12:58708200-58709200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr12:58708400-58708600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr12:58708400-58709000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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