Variant report
| Variant | rs74096984 |
|---|---|
| Chromosome Location | chr12:58552969-58552970 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:58546209..58549041-chr12:58551343..58554934,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs55634300 | 1.00[AFR][1000 genomes] |
| rs55881616 | 1.00[AFR][1000 genomes] |
| rs57235034 | 1.00[AFR][1000 genomes] |
| rs58592846 | 1.00[AFR][1000 genomes] |
| rs59003347 | 1.00[AFR][1000 genomes] |
| rs60605009 | 1.00[AFR][1000 genomes] |
| rs74096803 | 1.00[AFR][1000 genomes] |
| rs74096808 | 1.00[AFR][1000 genomes] |
| rs74096810 | 1.00[AFR][1000 genomes] |
| rs74096812 | 1.00[AFR][1000 genomes] |
| rs74096817 | 1.00[AFR][1000 genomes] |
| rs74096818 | 1.00[AFR][1000 genomes] |
| rs74096820 | 1.00[AFR][1000 genomes] |
| rs74096821 | 1.00[AFR][1000 genomes] |
| rs74096823 | 1.00[AFR][1000 genomes] |
| rs74096824 | 1.00[AFR][1000 genomes] |
| rs74096826 | 1.00[AFR][1000 genomes] |
| rs74096827 | 1.00[AFR][1000 genomes] |
| rs74096828 | 1.00[AFR][1000 genomes] |
| rs74096830 | 1.00[AFR][1000 genomes] |
| rs74096831 | 1.00[AFR][1000 genomes] |
| rs74096832 | 1.00[AFR][1000 genomes] |
| rs74099127 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899124 | chr12:58391839-58883507 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:58552400-58553600 | Enhancers | Skeletal Muscle Female | skeletal muscle |
