Variant report
| Variant | rs74099127 |
|---|---|
| Chromosome Location | chr12:58638564-58638565 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-XRCC6BP1-7 | chr12:58638161-58638648 | NONHSAT029022 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs55634300 | 1.00[AFR][1000 genomes] |
| rs55881616 | 1.00[AFR][1000 genomes] |
| rs57235034 | 1.00[AFR][1000 genomes] |
| rs58592846 | 1.00[AFR][1000 genomes] |
| rs59003347 | 1.00[AFR][1000 genomes] |
| rs60605009 | 1.00[AFR][1000 genomes] |
| rs74096803 | 1.00[AFR][1000 genomes] |
| rs74096808 | 1.00[AFR][1000 genomes] |
| rs74096810 | 1.00[AFR][1000 genomes] |
| rs74096812 | 1.00[AFR][1000 genomes] |
| rs74096817 | 1.00[AFR][1000 genomes] |
| rs74096818 | 1.00[AFR][1000 genomes] |
| rs74096820 | 1.00[AFR][1000 genomes] |
| rs74096821 | 1.00[AFR][1000 genomes] |
| rs74096823 | 1.00[AFR][1000 genomes] |
| rs74096824 | 1.00[AFR][1000 genomes] |
| rs74096826 | 1.00[AFR][1000 genomes] |
| rs74096827 | 1.00[AFR][1000 genomes] |
| rs74096828 | 1.00[AFR][1000 genomes] |
| rs74096830 | 1.00[AFR][1000 genomes] |
| rs74096831 | 1.00[AFR][1000 genomes] |
| rs74096832 | 1.00[AFR][1000 genomes] |
| rs74096984 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899124 | chr12:58391839-58883507 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv1047491 | chr12:58603291-58643219 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 3 | nsv973078 | chr12:58637733-58639570 | Enhancers | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 4 | esv15226 | chr12:58637852-58639969 | Inactive region | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv559047 | chr12:58637941-58639299 | Inactive region | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
