Variant report

Variant	rs74097984
Chromosome Location	chr13:79817199-79817200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11841956	1.00[EUR][1000 genomes]
rs17071061	1.00[ASN][1000 genomes]
rs59826001	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60043867	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7323811	1.00[EUR][1000 genomes]
rs74097964	1.00[EUR][1000 genomes]
rs74097996	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7987655	1.00[EUR][1000 genomes]
rs7996715	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916612	chr13:79669876-79820692	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79804400-79817200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:79815000-79817800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:79816200-79817200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:79817000-79817400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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