Variant report

Variant	rs7987655
Chromosome Location	chr13:79800102-79800103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11841956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59826001	1.00[EUR][1000 genomes]
rs60043867	1.00[EUR][1000 genomes]
rs7323811	1.00[EUR][1000 genomes]
rs74097964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74097984	1.00[EUR][1000 genomes]
rs74097996	1.00[EUR][1000 genomes]
rs7996715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916612	chr13:79669876-79820692	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1045334	chr13:79671094-79809717	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79797800-79804200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:79799200-79802000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr13:79799400-79800400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:79799400-79801000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:79799400-79801400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr13:79799400-79803600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:79799600-79800200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:79799600-79800200	Enhancers	Placenta	Placenta
9	chr13:79799600-79800200	Enhancers	NHEK	skin
10	chr13:79799600-79800400	Enhancers	HMEC	breast
11	chr13:79799800-79800200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:79799800-79800200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr13:79799800-79801000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr13:79800000-79801000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr13:79800000-79801400	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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