Variant report

Variant	rs74104309
Chromosome Location	chr1:97665656-97665657
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11165802	1.00[EUR][1000 genomes]
rs12074030	1.00[EUR][1000 genomes]
rs12079660	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4128472	1.00[EUR][1000 genomes]
rs59008244	1.00[EUR][1000 genomes]
rs74104304	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74104305	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74104307	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74104308	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74104311	1.00[EUR][1000 genomes]
rs74104313	1.00[EUR][1000 genomes]
rs74106701	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv530048	chr1:97457175-98031501	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007950	chr1:97466488-98021146	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97651800-97669800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:97654200-97671200	Weak transcription	Small Intestine	intestine
3	chr1:97656200-97668000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:97657200-97671200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr1:97658800-97665800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:97658800-97669400	Weak transcription	Fetal Lung	lung
7	chr1:97658800-97669600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:97658800-97669800	Weak transcription	Adipose Nuclei	Adipose
9	chr1:97658800-97672400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr1:97658800-97695600	Weak transcription	Primary B cells from cord blood	blood
11	chr1:97659000-97665800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr1:97659000-97697000	Weak transcription	Liver	Liver
13	chr1:97659200-97669600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:97659400-97665800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:97659400-97678200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:97659800-97671400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr1:97659800-97696000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr1:97660600-97698600	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr1:97663600-97698600	Weak transcription	Primary T cells from cord blood	blood
20	chr1:97664400-97665800	Weak transcription	Stomach Mucosa	stomach
21	chr1:97664400-97670400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr1:97664800-97666400	Weak transcription	Fetal Brain Male	brain
23	chr1:97665400-97667200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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