Variant report

Variant	rs74106701
Chromosome Location	chr1:97634031-97634032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11165802	1.00[EUR][1000 genomes]
rs12069444	1.00[AMR][1000 genomes]
rs12074030	1.00[EUR][1000 genomes]
rs12079660	1.00[EUR][1000 genomes]
rs290823	1.00[AMR][1000 genomes]
rs4128472	1.00[EUR][1000 genomes]
rs55737241	1.00[AMR][1000 genomes]
rs55890675	1.00[AMR][1000 genomes]
rs55896709	1.00[AMR][1000 genomes]
rs56116315	1.00[AMR][1000 genomes]
rs56283857	1.00[AMR][1000 genomes]
rs57607396	1.00[AMR][1000 genomes]
rs58372929	1.00[AMR][1000 genomes]
rs59008244	1.00[EUR][1000 genomes]
rs59996661	1.00[AMR][1000 genomes]
rs60455988	1.00[AMR][1000 genomes]
rs60480849	1.00[AMR][1000 genomes]
rs61208874	1.00[AMR][1000 genomes]
rs74104255	1.00[AMR][1000 genomes]
rs74104256	1.00[AMR][1000 genomes]
rs74104257	1.00[AMR][1000 genomes]
rs74104259	1.00[AMR][1000 genomes]
rs74104304	1.00[EUR][1000 genomes]
rs74104305	1.00[EUR][1000 genomes]
rs74104307	1.00[EUR][1000 genomes]
rs74104308	1.00[EUR][1000 genomes]
rs74104309	1.00[EUR][1000 genomes]
rs74104311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74104313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74104319	1.00[AMR][1000 genomes]
rs74104321	1.00[AMR][1000 genomes]
rs74106608	1.00[AMR][1000 genomes]
rs74106609	1.00[AMR][1000 genomes]
rs74106636	1.00[AMR][1000 genomes]
rs74106638	1.00[AMR][1000 genomes]
rs74106640	1.00[AMR][1000 genomes]
rs74106641	1.00[AMR][1000 genomes]
rs74106643	1.00[AMR][1000 genomes]
rs74106677	1.00[AMR][1000 genomes]
rs74106679	1.00[AMR][1000 genomes]
rs74106684	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv530048	chr1:97457175-98031501	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007950	chr1:97466488-98021146	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97611600-97639600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:97620200-97658400	Weak transcription	Lung	lung
3	chr1:97626600-97660400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:97627000-97635600	Weak transcription	Fetal Brain Female	brain
5	chr1:97627000-97643000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:97627600-97657800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr1:97629400-97638200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:97629400-97654000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr1:97629400-97655800	Weak transcription	NHDF-Ad	bronchial
10	chr1:97629400-97658200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr1:97629600-97637000	Weak transcription	Liver	Liver
12	chr1:97630400-97636800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr1:97630400-97636800	Weak transcription	Primary T cells from cord blood	blood
14	chr1:97630400-97652800	Weak transcription	Primary B cells from cord blood	blood
15	chr1:97630400-97654400	Weak transcription	Psoas Muscle	Psoas
16	chr1:97630600-97635800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr1:97633200-97635600	Weak transcription	Fetal Brain Male	brain
18	chr1:97634000-97645200	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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