Variant report

Variant	rs12069444
Chromosome Location	chr1:97443970-97443971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11165722	1.00[AMR][1000 genomes]
rs11165737	1.00[YRI][hapmap]
rs11165738	1.00[YRI][hapmap]
rs12082415	1.00[AMR][1000 genomes]
rs290823	1.00[AMR][1000 genomes]
rs55737241	1.00[AMR][1000 genomes]
rs55890675	1.00[AMR][1000 genomes]
rs55896709	1.00[AMR][1000 genomes]
rs56116315	1.00[AMR][1000 genomes]
rs56283857	1.00[AMR][1000 genomes]
rs57607396	1.00[AMR][1000 genomes]
rs58372929	1.00[AMR][1000 genomes]
rs59996661	1.00[AMR][1000 genomes]
rs60455988	1.00[AMR][1000 genomes]
rs60480849	1.00[AMR][1000 genomes]
rs74104255	1.00[AMR][1000 genomes]
rs74104256	1.00[AMR][1000 genomes]
rs74104257	1.00[AMR][1000 genomes]
rs74104259	1.00[AMR][1000 genomes]
rs74106608	1.00[AMR][1000 genomes]
rs74106609	1.00[AMR][1000 genomes]
rs74106636	1.00[AMR][1000 genomes]
rs74106638	1.00[AMR][1000 genomes]
rs74106640	1.00[AMR][1000 genomes]
rs74106641	1.00[AMR][1000 genomes]
rs74106643	1.00[AMR][1000 genomes]
rs74106677	1.00[AMR][1000 genomes]
rs74106679	1.00[AMR][1000 genomes]
rs74106684	1.00[AMR][1000 genomes]
rs74106701	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv522619	chr1:97440897-97447183	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97439400-97444600	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:97439600-97444200	Weak transcription	Fetal Stomach	stomach
3	chr1:97439800-97451800	Weak transcription	Fetal Heart	heart
4	chr1:97443800-97445200	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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