Variant report

Variant	rs12082415
Chromosome Location	chr1:97306531-97306532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11165722	1.00[AMR][1000 genomes]
rs12069444	1.00[AMR][1000 genomes]
rs12091200	1.00[AMR][1000 genomes]
rs290823	1.00[AMR][1000 genomes]
rs55890675	1.00[AMR][1000 genomes]
rs56116315	1.00[AMR][1000 genomes]
rs57607396	1.00[AMR][1000 genomes]
rs59996661	1.00[AMR][1000 genomes]
rs74104255	1.00[AMR][1000 genomes]
rs74104256	1.00[AMR][1000 genomes]
rs74104257	1.00[AMR][1000 genomes]
rs74104259	1.00[AMR][1000 genomes]
rs74106608	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830681	chr1:97165786-97338064	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1966	chr1:97287841-97332500	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97282600-97308400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:97292000-97308400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:97303400-97308000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:97303600-97308000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:97303800-97308800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:97304000-97308400	Weak transcription	Fetal Stomach	stomach
7	chr1:97304200-97309000	Weak transcription	Adipose Nuclei	Adipose
8	chr1:97305200-97306800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:97305400-97306800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:97306200-97306800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:97306400-97306600	Enhancers	NHDF-Ad	bronchial
12	chr1:97306400-97308400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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