Variant report
| Variant | rs74104255 |
|---|---|
| Chromosome Location | chr1:97457072-97457073 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11165722 | 1.00[AMR][1000 genomes] |
| rs12069444 | 1.00[AMR][1000 genomes] |
| rs12082415 | 1.00[AMR][1000 genomes] |
| rs290823 | 1.00[AMR][1000 genomes] |
| rs55737241 | 1.00[AMR][1000 genomes] |
| rs55890675 | 1.00[AMR][1000 genomes] |
| rs55896709 | 1.00[AMR][1000 genomes] |
| rs56116315 | 1.00[AMR][1000 genomes] |
| rs56283857 | 1.00[AMR][1000 genomes] |
| rs57607396 | 1.00[AMR][1000 genomes] |
| rs58372929 | 1.00[AMR][1000 genomes] |
| rs59996661 | 1.00[AMR][1000 genomes] |
| rs60455988 | 1.00[AMR][1000 genomes] |
| rs60480849 | 1.00[AMR][1000 genomes] |
| rs61208874 | 1.00[AMR][1000 genomes] |
| rs74104256 | 1.00[AMR][1000 genomes] |
| rs74104257 | 1.00[AMR][1000 genomes] |
| rs74104259 | 1.00[AMR][1000 genomes] |
| rs74104311 | 1.00[AMR][1000 genomes] |
| rs74104313 | 1.00[AMR][1000 genomes] |
| rs74106608 | 1.00[AMR][1000 genomes] |
| rs74106609 | 1.00[AMR][1000 genomes] |
| rs74106636 | 1.00[AMR][1000 genomes] |
| rs74106638 | 1.00[AMR][1000 genomes] |
| rs74106640 | 1.00[AMR][1000 genomes] |
| rs74106641 | 1.00[AMR][1000 genomes] |
| rs74106643 | 1.00[AMR][1000 genomes] |
| rs74106677 | 1.00[AMR][1000 genomes] |
| rs74106679 | 1.00[AMR][1000 genomes] |
| rs74106684 | 1.00[AMR][1000 genomes] |
| rs74106701 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491816 | chr1:97266403-98223619 | Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:97448200-97457200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
