Variant report

Variant	rs74106684
Chromosome Location	chr1:97583727-97583728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:97583499..97585918-chr1:97586058..97587654,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12069444	1.00[AMR][1000 genomes]
rs290823	1.00[AMR][1000 genomes]
rs55737241	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55890675	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55896709	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56116315	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56283857	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57607396	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58372929	1.00[AMR][1000 genomes]
rs59996661	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60455988	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60480849	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61208874	1.00[AMR][1000 genomes]
rs72726671	1.00[EUR][1000 genomes]
rs74104255	1.00[AMR][1000 genomes]
rs74104256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74104257	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74104259	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74104311	1.00[AMR][1000 genomes]
rs74104313	1.00[AMR][1000 genomes]
rs74104319	1.00[AMR][1000 genomes]
rs74104321	1.00[AMR][1000 genomes]
rs74106608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106636	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106638	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106640	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106641	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106643	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106677	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106679	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106701	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv530048	chr1:97457175-98031501	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007950	chr1:97466488-98021146	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830692	chr1:97501492-97625153	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97538000-97603600	Weak transcription	Psoas Muscle	Psoas
2	chr1:97542400-97584800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:97557600-97585000	Weak transcription	Brain Angular Gyrus	brain
4	chr1:97560800-97603600	Weak transcription	Pancreas	Pancrea
5	chr1:97562600-97586600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:97563600-97594000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr1:97563600-97619200	Weak transcription	Dnd41	blood
8	chr1:97564200-97583800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr1:97564200-97632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr1:97565400-97603600	Weak transcription	Left Ventricle	heart
11	chr1:97566000-97599400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr1:97570400-97588400	Weak transcription	Aorta	Aorta
13	chr1:97570600-97603800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr1:97571200-97604000	Weak transcription	Primary B cells from cord blood	blood
15	chr1:97572400-97587200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:97577600-97587800	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr1:97578200-97584800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr1:97578400-97587000	Weak transcription	Primary T cells from cord blood	blood
19	chr1:97579000-97596800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr1:97580000-97584000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr1:97580800-97583800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:97580800-97584000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:97580800-97595400	Weak transcription	Liver	Liver
24	chr1:97580800-97604400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr1:97581400-97584800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr1:97581600-97584800	Weak transcription	Fetal Brain Female	brain
27	chr1:97582000-97584800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr1:97582000-97585000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr1:97582000-97585000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr1:97582000-97585200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr1:97583000-97583800	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr1:97583000-97584800	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr1:97583000-97596800	Weak transcription	Adipose Nuclei	Adipose
34	chr1:97583200-97589600	Weak transcription	HSMM	muscle
35	chr1:97583600-97584200	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr1:97583600-97584200	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr1:97583600-97585200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr1:97583600-97586000	Enhancers	HUES48 Cell Line	embryonic stem cell

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