The 2.0 version of rSNPBase

Variant report

Variant rs58372929
Chromosome Location chr1:97656754-97656755
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:97620200-97658400 Weak transcription Lung lung
2 chr1:97626600-97660400 Weak transcription Skeletal Muscle Male skeletal muscle
3 chr1:97627600-97657800 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr1:97629400-97658200 Weak transcription Stomach Smooth Muscle stomach
5 chr1:97635400-97658400 Weak transcription Primary T cells fromperipheralblood blood
6 chr1:97636000-97660400 Weak transcription Right Ventricle heart
7 chr1:97636800-97657000 Weak transcription Dnd41 blood
8 chr1:97639600-97658400 Weak transcription HSMM muscle
9 chr1:97639800-97658000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr1:97640000-97663000 Weak transcription Esophagus oesophagus
11 chr1:97640400-97657600 Weak transcription Adipose Nuclei Adipose
12 chr1:97641200-97658400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr1:97642000-97656800 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr1:97643600-97660200 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr1:97645400-97660200 Weak transcription Left Ventricle heart
16 chr1:97646200-97656800 Weak transcription Primary T helper cells fromperipheralblood blood
17 chr1:97648800-97657200 Weak transcription Primary T regulatory cells fromperipheralblood blood
18 chr1:97648800-97659800 Strong transcription Monocytes-CD14+_RO01746 blood
19 chr1:97649000-97659800 Strong transcription Primary monocytes fromperipheralblood blood
20 chr1:97649000-97661200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
21 chr1:97649600-97662400 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr1:97651800-97669800 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr1:97652000-97658000 Weak transcription Fetal Lung lung
24 chr1:97652800-97658800 Strong transcription Primary B cells from cord blood blood
25 chr1:97653400-97660800 Weak transcription Ovary ovary
26 chr1:97653600-97659000 Strong transcription Liver Liver
27 chr1:97654000-97660200 Strong transcription Primary T cells from cord blood blood
28 chr1:97654200-97671200 Weak transcription Small Intestine intestine
29 chr1:97654600-97658000 Weak transcription Primary hematopoietic stem cells blood
30 chr1:97654600-97658200 Weak transcription Psoas Muscle Psoas
31 chr1:97654600-97659400 Strong transcription Primary neutrophils fromperipheralblood blood
32 chr1:97655800-97658200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr1:97655800-97658600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
34 chr1:97655800-97659200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
35 chr1:97656000-97657800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr1:97656000-97659400 Strong transcription Primary T helper cells PMA-I stimulated --
37 chr1:97656000-97659400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr1:97656200-97657400 Weak transcription Brain Germinal Matrix brain
39 chr1:97656200-97658400 Weak transcription Colon Smooth Muscle Colon
40 chr1:97656200-97658400 Weak transcription Rectal Smooth Muscle rectum
41 chr1:97656200-97668000 Weak transcription Brain Cingulate Gyrus brain
42 chr1:97656400-97657800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr1:97656400-97657800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr1:97656400-97658000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:97656400-97658000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr1:97656400-97658000 Weak transcription Brain Anterior Caudate brain
47 chr1:97656400-97658000 Weak transcription Hela-S3 cervix
48 chr1:97656400-97658000 Weak transcription HMEC breast
49 chr1:97656400-97658000 Weak transcription NH-A brain
50 chr1:97656400-97658000 Weak transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015