Variant report

Variant	rs74104728
Chromosome Location	chr13:87348958-87348959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10162084	1.00[EUR][1000 genomes]
rs10162088	1.00[EUR][1000 genomes]
rs12385885	1.00[EUR][1000 genomes]
rs13378780	1.00[EUR][1000 genomes]
rs13378784	1.00[EUR][1000 genomes]
rs13378785	1.00[EUR][1000 genomes]
rs16942858	1.00[EUR][1000 genomes]
rs55970332	1.00[EUR][1000 genomes]
rs59218190	1.00[EUR][1000 genomes]
rs60619272	1.00[EUR][1000 genomes]
rs61181496	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6492436	1.00[EUR][1000 genomes]
rs7317629	1.00[EUR][1000 genomes]
rs7323778	1.00[EUR][1000 genomes]
rs7327900	1.00[EUR][1000 genomes]
rs7328076	1.00[EUR][1000 genomes]
rs7328167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7333527	1.00[EUR][1000 genomes]
rs73546452	1.00[EUR][1000 genomes]
rs74101527	1.00[EUR][1000 genomes]
rs74101529	1.00[EUR][1000 genomes]
rs7982795	1.00[EUR][1000 genomes]
rs7984931	1.00[EUR][1000 genomes]
rs7984933	1.00[EUR][1000 genomes]
rs7985316	1.00[EUR][1000 genomes]
rs7985651	1.00[EUR][1000 genomes]
rs7989317	1.00[EUR][1000 genomes]
rs7989507	1.00[EUR][1000 genomes]
rs7992308	1.00[EUR][1000 genomes]
rs7993301	1.00[EUR][1000 genomes]
rs7993529	1.00[EUR][1000 genomes]
rs7993532	1.00[EUR][1000 genomes]
rs7993730	1.00[EUR][1000 genomes]
rs7997691	1.00[EUR][1000 genomes]
rs9301685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9583695	1.00[EUR][1000 genomes]
rs9583696	1.00[EUR][1000 genomes]
rs9583698	1.00[EUR][1000 genomes]
rs9583708	1.00[EUR][1000 genomes]
rs9588630	1.00[EUR][1000 genomes]
rs9588631	1.00[EUR][1000 genomes]
rs9588632	1.00[EUR][1000 genomes]
rs9588637	1.00[EUR][1000 genomes]
rs9588663	1.00[EUR][1000 genomes]
rs9588665	1.00[EUR][1000 genomes]
rs9588695	1.00[EUR][1000 genomes]
rs9588943	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047136	chr13:86979109-87555131	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv900762	chr13:87073397-87353400	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900763	chr13:87073397-87658986	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1047134	chr13:87094248-87356929	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv562618	chr13:87110325-87364635	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv900773	chr13:87159109-87463100	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1038179	chr13:87199973-87391741	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2753866	chr13:87260025-87495281	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1052214	chr13:87283152-87428272	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv562624	chr13:87304859-87496155	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv900775	chr13:87311967-87658986	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1045701	chr13:87335640-87436713	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87347600-87349800	Enhancers	Adipose Nuclei	Adipose

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