Variant report

Variant	rs74109143
Chromosome Location	chr13:94604685-94604686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11842860	0.81[EUR][1000 genomes]
rs11843509	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60361680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109123	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109124	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109128	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1052141	chr13:94596760-94689892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94598000-94608200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:94603000-94604800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr13:94603400-94604800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:94603400-94605800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:94603600-94607800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:94604200-94605400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr13:94604400-94608400	Weak transcription	Colon Smooth Muscle	Colon
8	chr13:94604600-94607000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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