Variant report

Variant	rs74109642
Chromosome Location	chr13:90575301-90575302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs55652459	1.00[AMR][1000 genomes]
rs55924547	1.00[AMR][1000 genomes]
rs56067637	1.00[AMR][1000 genomes]
rs56829002	1.00[AMR][1000 genomes]
rs57359325	1.00[AMR][1000 genomes]
rs58564246	1.00[AMR][1000 genomes]
rs58749578	1.00[AMR][1000 genomes]
rs58875521	1.00[AMR][1000 genomes]
rs59714296	1.00[AMR][1000 genomes]
rs59889696	1.00[AMR][1000 genomes]
rs60034098	1.00[AMR][1000 genomes]
rs60443681	1.00[AMR][1000 genomes]
rs60892733	1.00[AMR][1000 genomes]
rs74108804	1.00[AMR][1000 genomes]
rs74108805	1.00[AMR][1000 genomes]
rs74108807	1.00[AMR][1000 genomes]
rs74108808	1.00[AMR][1000 genomes]
rs74108809	1.00[AMR][1000 genomes]
rs74108810	1.00[AMR][1000 genomes]
rs74108811	1.00[AMR][1000 genomes]
rs74108814	1.00[AMR][1000 genomes]
rs74108815	1.00[AMR][1000 genomes]
rs74108817	1.00[AMR][1000 genomes]
rs74108818	1.00[AMR][1000 genomes]
rs74108819	1.00[AMR][1000 genomes]
rs74108820	1.00[AMR][1000 genomes]
rs74108821	1.00[AMR][1000 genomes]
rs74108822	1.00[AMR][1000 genomes]
rs74108823	1.00[AMR][1000 genomes]
rs74108829	1.00[AMR][1000 genomes]
rs74108832	1.00[AMR][1000 genomes]
rs74108837	1.00[AMR][1000 genomes]
rs74108838	1.00[AMR][1000 genomes]
rs74109648	1.00[AMR][1000 genomes]
rs74109662	1.00[AMR][1000 genomes]
rs74109664	1.00[AMR][1000 genomes]
rs74109778	1.00[AMR][1000 genomes]
rs74109783	1.00[AMR][1000 genomes]
rs74109939	1.00[AMR][1000 genomes]
rs74110935	1.00[AMR][1000 genomes]
rs74110937	1.00[AMR][1000 genomes]
rs74110942	1.00[AMR][1000 genomes]
rs74110943	1.00[AMR][1000 genomes]
rs74110944	1.00[AMR][1000 genomes]
rs74110946	1.00[AMR][1000 genomes]
rs74110947	1.00[AMR][1000 genomes]
rs74110950	1.00[AMR][1000 genomes]
rs74110951	1.00[AMR][1000 genomes]
rs74110952	1.00[AMR][1000 genomes]
rs74110954	1.00[AMR][1000 genomes]
rs74110955	1.00[AMR][1000 genomes]
rs74110956	1.00[AMR][1000 genomes]
rs74110957	1.00[AMR][1000 genomes]
rs74110959	1.00[AMR][1000 genomes]
rs74110960	1.00[AMR][1000 genomes]
rs74110961	1.00[AMR][1000 genomes]
rs74110964	1.00[AMR][1000 genomes]
rs74110965	1.00[AMR][1000 genomes]
rs74110968	1.00[AMR][1000 genomes]
rs74111200	1.00[AMR][1000 genomes]
rs74111440	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2422378	chr13:90280619-90799585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3330508	chr13:90401807-90835334	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1039817	chr13:90425965-90884271	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
5	nsv1054500	chr13:90427793-90879758	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv541867	chr13:90427793-90879758	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv456064	chr13:90429193-90886078	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
8	nsv562644	chr13:90429193-90886078	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
9	nsv430596	chr13:90467099-90659399	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1036137	chr13:90509098-90772092	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv541868	chr13:90509098-90772092	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv1047307	chr13:90509098-90849504	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
13	nsv541869	chr13:90509098-90849504	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv1044540	chr13:90509098-91497974	Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
15	nsv541870	chr13:90509098-91497974	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
16	nsv976252	chr13:90567002-90602202	Enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	nsv983754	chr13:90573353-90585902	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90575200-90575800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr13:90575200-90575800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr13:90575200-90575800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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