Variant report

Variant	rs74110451
Chromosome Location	chr13:90277132-90277133
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs55652459	0.84[AFR][1000 genomes]
rs55924547	0.84[AFR][1000 genomes]
rs56067637	0.84[AFR][1000 genomes]
rs56829002	0.84[AFR][1000 genomes]
rs57359325	0.84[AFR][1000 genomes]
rs57657630	1.00[AMR][1000 genomes]
rs58196832	1.00[AMR][1000 genomes]
rs58564246	0.84[AFR][1000 genomes]
rs58749578	0.84[AFR][1000 genomes]
rs58875521	0.84[AFR][1000 genomes]
rs59272959	0.84[AFR][1000 genomes]
rs59492595	1.00[AMR][1000 genomes]
rs59714296	0.84[AFR][1000 genomes]
rs59889696	0.84[AFR][1000 genomes]
rs60034098	0.84[AFR][1000 genomes]
rs60317786	1.00[AMR][1000 genomes]
rs60443681	0.84[AFR][1000 genomes]
rs60892733	0.84[AFR][1000 genomes]
rs74108148	1.00[AMR][1000 genomes]
rs74108150	1.00[AMR][1000 genomes]
rs74108157	1.00[AMR][1000 genomes]
rs74108795	0.84[AFR][1000 genomes]
rs74108796	0.84[AFR][1000 genomes]
rs74108804	0.84[AFR][1000 genomes]
rs74108805	0.84[AFR][1000 genomes]
rs74108807	0.84[AFR][1000 genomes]
rs74108808	0.84[AFR][1000 genomes]
rs74108809	0.84[AFR][1000 genomes]
rs74108810	0.84[AFR][1000 genomes]
rs74108811	0.84[AFR][1000 genomes]
rs74108814	0.84[AFR][1000 genomes]
rs74108815	0.84[AFR][1000 genomes]
rs74108817	0.84[AFR][1000 genomes]
rs74108818	0.84[AFR][1000 genomes]
rs74108820	0.84[AFR][1000 genomes]
rs74108821	0.84[AFR][1000 genomes]
rs74108823	0.84[AFR][1000 genomes]
rs74108828	0.84[AFR][1000 genomes]
rs74108829	0.84[AFR][1000 genomes]
rs74108832	0.84[AFR][1000 genomes]
rs74108837	0.84[AFR][1000 genomes]
rs74108838	0.84[AFR][1000 genomes]
rs74110405	1.00[AMR][1000 genomes]
rs74110937	0.84[AFR][1000 genomes]
rs74110942	0.84[AFR][1000 genomes]
rs74110943	0.84[AFR][1000 genomes]
rs74110944	0.84[AFR][1000 genomes]
rs74110946	0.84[AFR][1000 genomes]
rs74110947	0.84[AFR][1000 genomes]
rs74110950	0.84[AFR][1000 genomes]
rs74110951	0.84[AFR][1000 genomes]
rs74110952	0.84[AFR][1000 genomes]
rs74110954	0.84[AFR][1000 genomes]
rs74110955	0.84[AFR][1000 genomes]
rs74110956	0.84[AFR][1000 genomes]
rs74110957	0.84[AFR][1000 genomes]
rs74110960	0.84[AFR][1000 genomes]
rs74110961	0.84[AFR][1000 genomes]
rs74110964	0.84[AFR][1000 genomes]
rs74110965	0.84[AFR][1000 genomes]
rs74110968	0.84[AFR][1000 genomes]
rs74111440	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1038982	chr13:90199563-90345091	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv456059	chr13:90276827-90355675	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv562640	chr13:90276827-90355675	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90267000-90280200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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