Variant report

Variant	rs60317786
Chromosome Location	chr13:90168205-90168206
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57657630	1.00[AMR][1000 genomes]
rs58196832	1.00[AMR][1000 genomes]
rs59492595	1.00[AMR][1000 genomes]
rs74108148	1.00[AMR][1000 genomes]
rs74108150	1.00[AMR][1000 genomes]
rs74108157	1.00[AMR][1000 genomes]
rs74110405	1.00[AMR][1000 genomes]
rs74110451	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1044807	chr13:89991827-90263328	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1039775	chr13:89995537-90260944	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv900860	chr13:90008941-90259291	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv533455	chr13:90041897-90255725	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv900864	chr13:90110725-90173515	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv3433367	chr13:90162000-90184090	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90166000-90170400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:90166600-90168400	Enhancers	HUVEC	blood vessel
3	chr13:90167600-90170600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:90167800-90169600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr13:90167800-90169800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr13:90167800-90172400	Weak transcription	HMEC	breast
7	chr13:90168000-90170000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:90168000-90170600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr13:90168000-90172400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:90168000-90172800	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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