Variant report

Variant	rs74111300
Chromosome Location	chr10:4541962-4541963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11817902	0.91[AFR][1000 genomes]
rs74111272	0.83[AFR][1000 genomes]
rs74111299	0.91[AFR][1000 genomes]
rs74111301	1.00[AFR][1000 genomes]
rs74111808	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1041785	chr10:4507158-4564194	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv522046	chr10:4538492-4570425	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4540200-4542200	Enhancers	Colon Smooth Muscle	Colon
2	chr10:4540400-4542200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:4540400-4542200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:4540400-4542200	Enhancers	Rectal Smooth Muscle	rectum
5	chr10:4540400-4542200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr10:4540400-4542200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr10:4540400-4542200	Enhancers	HMEC	breast
8	chr10:4540400-4542200	Enhancers	HSMM	muscle
9	chr10:4540600-4542200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:4540600-4542200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:4540600-4542200	Enhancers	Psoas Muscle	Psoas
12	chr10:4540600-4551400	Weak transcription	Aorta	Aorta
13	chr10:4540800-4542000	Weak transcription	Right Ventricle	heart
14	chr10:4540800-4543200	Weak transcription	Gastric	stomach
15	chr10:4540800-4546800	Weak transcription	Left Ventricle	heart
16	chr10:4541000-4542000	Weak transcription	Ovary	ovary
17	chr10:4541000-4542200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:4541000-4542200	Enhancers	Stomach Smooth Muscle	stomach
19	chr10:4541200-4542200	Enhancers	Spleen	Spleen
20	chr10:4541200-4542400	Enhancers	Fetal Heart	heart
21	chr10:4541400-4542200	Enhancers	Fetal Lung	lung
22	chr10:4541400-4542200	Enhancers	NHDF-Ad	bronchial
23	chr10:4541400-4542800	Weak transcription	HUVEC	blood vessel
24	chr10:4541600-4542200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:4541600-4542200	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr10:4541600-4554800	Weak transcription	NHLF	lung
27	chr10:4541800-4543000	Weak transcription	Fetal Intestine Small	intestine
28	chr10:4541800-4548200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:4541800-4548400	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links