Variant report

Variant	rs74111628
Chromosome Location	chr10:4693244-4693245
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:61)
Chromatin interactive
region (count:8)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr10:4692129-4693343	HEK293	kidney:	n/a	n/a
2	RAD21	chr10:4692873-4693245	SK-N-SH_RA	brain:	n/a	chr10:4692999-4693008
3	RAD21	chr10:4692447-4693269	IMR90	lung:	n/a	chr10:4692999-4693008

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:4693210-4693260	AG09309	skin:	n/a
2	chr10:4693210-4693260	U87	brain:	n/a
3	chr10:4693210-4693260	AG04449	skin:	fetal
4	chr10:4693210-4693260	ProgFib	skin:	n/a
5	chr10:4693210-4693260	CMK	blood:	n/a
6	chr10:4693210-4693260	HEEpiC	esophagus:	n/a
7	chr10:4693210-4693260	AoSMC	blood vessel:	n/a
8	chr10:4693210-4693260	H1-hESC	embryonic stem cell:	embryo
9	chr10:4693210-4693260	SKMC	muscle:	n/a
10	chr10:4693210-4693260	HAEpiC	amniotic membrane:	n/a
11	chr10:4693210-4693260	HRE	kidney:	n/a
12	chr10:4693210-4693260	Caco-2	colon:	n/a
13	chr10:4693210-4693260	GM12892	blood:	n/a
14	chr10:4693210-4693260	Jurkat	blood:	n/a
15	chr10:4693210-4693260	PANC-1	pancreas:	n/a
16	chr10:4693210-4693260	HRPEpiC	eye:	n/a
17	chr10:4693210-4693260	BJ	skin:	n/a
18	chr10:4693210-4693260	HUVEC	blood vessel:	n/a
19	chr10:4693210-4693260	GM06990	blood:	n/a
20	chr10:4693210-4693260	GM19239	blood:	n/a
21	chr10:4693210-4693260	SK-N-SH	brain:	n/a
22	chr10:4693210-4693260	NHDF-neo	bronchial:	n/a
23	chr10:4693210-4693260	IMR90	lung:	fetal
24	chr10:4693210-4693260	AG10803	skin:	n/a
25	chr10:4693210-4693260	HCPEpiC	choroid plexus:	n/a
26	chr10:4693210-4693260	NB4	blood:	n/a
27	chr10:4693210-4693260	AG09319	gingival:	n/a
28	chr10:4693210-4693260	HEK293	kidney:	embryo
29	chr10:4693210-4693260	NHBE	bronchial:	n/a
30	chr10:4693210-4693260	HRCEpiC	kidney:	n/a
31	chr10:4693210-4693260	MCF10A-Er-Src	breast:	n/a
32	chr10:4693210-4693260	GM12878	blood:	n/a
33	chr10:4693210-4693260	ECC-1	luminal epithelium:	n/a
34	chr10:4693210-4693260	MCF-7	breast:	n/a
35	chr10:4693210-4693260	HL-60	blood:	n/a
36	chr10:4693210-4693260	LNCaP	prostate:	n/a
37	chr10:4693210-4693260	HMEC	breast:	n/a
38	chr10:4693210-4693260	GM12891	blood:	n/a
39	chr10:4693210-4693260	Hepatocyte	liver:	n/a
40	chr10:4693210-4693260	A549	lung:	n/a
41	chr10:4693210-4693260	Hela-S3	cervix:	n/a
42	chr10:4693210-4693260	HCT-116	colon:	n/a
43	chr10:4693210-4693260	HCF	heart:	n/a
44	chr10:4693210-4693260	HCM	heart:	n/a
45	chr10:4693210-4693260	K562	blood:	n/a
46	chr10:4693210-4693260	AG04450	lung:	fetal
47	chr10:4693210-4693260	BE2_C	brain:	n/a
48	chr10:4693210-4693260	RPTEC	kidney:	n/a
49	chr10:4693210-4693260	T-47D	breast:	n/a
50	chr10:4693210-4693260	NH-A	brain:	n/a

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:4691020..4693765-chr10:4695253..4697070,2	K562	blood:
2	chr10:3827665..3830468-chr10:4693096..4697578,6	MCF-7	breast:
3	chr10:4692495..4696289-chr10:4704356..4708036,4	MCF-7	breast:
4	chr10:4691378..4694078-chr10:4702195..4704638,2	MCF-7	breast:
5	chr10:4683804..4685343-chr10:4691589..4693258,2	MCF-7	breast:
6	chr10:4586883..4588795-chr10:4691830..4693502,2	MCF-7	breast:
7	chr10:3805083..3807904-chr10:4690931..4693769,2	MCF-7	breast:
8	chr10:4554841..4555595-chr10:4693003..4693874,4	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKR1C2-4	chr10:4692378-4693395	XLOC_008703
2	lnc-AKR1C2-4	chr10:4693009-4693395	ENSG00000231298
3	lnc-AKR1C2-4	chr10:4692148-4693395	NONHSAT011101
4	lnc-AKR1C2-4	chr10:4692377-4693395	ENSG00000231298.2
5	lnc-AKR1C2-4	chr10:4692377-4693395	NONHSAT011106

No data

Variant related genes	Relation type
LINC00705	TF binding region
LINC00705	CpG island

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs442878	1.00[AFR][1000 genomes]
rs56362541	1.00[AFR][1000 genomes]
rs57494125	1.00[AFR][1000 genomes]
rs57978755	0.84[AFR][1000 genomes]
rs59533084	1.00[AFR][1000 genomes]
rs74111626	1.00[AFR][1000 genomes]
rs74111627	1.00[AFR][1000 genomes]
rs74111629	1.00[AFR][1000 genomes]
rs74111630	1.00[AFR][1000 genomes]
rs74111634	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv1798456	chr10:4689138-4731081	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1817443	chr10:4689138-4731081	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1831014	chr10:4689138-4731081	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1838419	chr10:4689138-4731081	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1805926	chr10:4689842-4720626	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv1809203	chr10:4689842-4720626	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv1840346	chr10:4689842-4720626	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv1842933	chr10:4689842-4720626	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv1848476	chr10:4689842-4720626	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4680600-4694200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:4680600-4703800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:4682800-4693800	Weak transcription	NHEK	skin
4	chr10:4682800-4694000	Weak transcription	HMEC	breast
5	chr10:4688800-4694800	Enhancers	Dnd41	blood
6	chr10:4689400-4694800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:4690000-4697200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:4691600-4694600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:4691800-4693400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:4692200-4693400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:4692200-4694800	Enhancers	NHDF-Ad	bronchial
12	chr10:4692200-4694800	Enhancers	NHLF	lung
13	chr10:4692400-4694400	Genic enhancers	HUVEC	blood vessel
14	chr10:4692400-4694800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:4692600-4695600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:4692800-4693400	Enhancers	Fetal Lung	lung
17	chr10:4692800-4693800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:4692800-4694000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:4692800-4694600	Enhancers	Placenta Amnion	Placenta Amnion
20	chr10:4693000-4693600	Enhancers	Brain Germinal Matrix	brain
21	chr10:4693000-4694200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:4693000-4694200	Weak transcription	Stomach Mucosa	stomach
23	chr10:4693000-4695400	Weak transcription	Fetal Kidney	kidney
24	chr10:4693000-4703000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:4693000-4703600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:4693000-4703600	Weak transcription	Right Atrium	heart
27	chr10:4693200-4694200	Weak transcription	Esophagus	oesophagus
28	chr10:4693200-4694200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr10:4693200-4694200	Weak transcription	Left Ventricle	heart
30	chr10:4693200-4695400	Weak transcription	Lung	lung
31	chr10:4693200-4697200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:4693200-4697200	Weak transcription	Fetal Muscle Leg	muscle
33	chr10:4693200-4697200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:4693200-4697400	Weak transcription	Osteobl	bone
35	chr10:4693200-4697600	Weak transcription	Adipose Nuclei	Adipose
36	chr10:4693200-4699000	Weak transcription	HSMM	muscle
37	chr10:4693200-4702400	Weak transcription	Psoas Muscle	Psoas
38	chr10:4693200-4702400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr10:4693200-4703000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:4693200-4703000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr10:4693200-4703800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:4693200-4703800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr10:4693200-4703800	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links