Variant report

Variant	rs74111629
Chromosome Location	chr10:4694626-4694627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr10:4694468-4694668	MCF10A-Er-Src	breast:	n/a	chr10:4694581-4694589 chr10:4694596-4694607
2	FOS	chr10:4694501-4694682	MCF10A-Er-Src	breast:	n/a	chr10:4694581-4694589 chr10:4694596-4694607
3	KAP1	chr10:4693719-4694908	HEK293	kidney:	n/a	chr10:4694579-4694588
4	E2F6	chr10:4694626-4695046	H1-hESC	embryonic stem cell:	n/a	n/a
5	E2F6	chr10:4694463-4695148	H1-hESC	embryonic stem cell:	n/a	n/a
6	FOS	chr10:4694535-4694740	MCF10A-Er-Src	breast:	n/a	chr10:4694581-4694589 chr10:4694596-4694607

No.	Distal block	Cell Line	Cell type
1	chr10:3827665..3830468-chr10:4693096..4697578,6	MCF-7	breast:
2	chr10:4692495..4696289-chr10:4704356..4708036,4	MCF-7	breast:
3	chr10:4694173..4696454-chr10:4704960..4707093,2	K562	blood:

Variant related genes	Relation type
LINC00705	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs442878	1.00[AFR][1000 genomes]
rs56362541	1.00[AFR][1000 genomes]
rs57494125	1.00[AFR][1000 genomes]
rs57978755	0.84[AFR][1000 genomes]
rs59533084	1.00[AFR][1000 genomes]
rs74111626	1.00[AFR][1000 genomes]
rs74111627	1.00[AFR][1000 genomes]
rs74111628	1.00[AFR][1000 genomes]
rs74111630	1.00[AFR][1000 genomes]
rs74111634	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv1798456	chr10:4689138-4731081	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1817443	chr10:4689138-4731081	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1831014	chr10:4689138-4731081	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1838419	chr10:4689138-4731081	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1805926	chr10:4689842-4720626	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv1809203	chr10:4689842-4720626	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv1840346	chr10:4689842-4720626	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv1842933	chr10:4689842-4720626	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv1848476	chr10:4689842-4720626	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4680600-4703800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4688800-4694800	Enhancers	Dnd41	blood
3	chr10:4689400-4694800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:4690000-4697200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:4692200-4694800	Enhancers	NHDF-Ad	bronchial
6	chr10:4692200-4694800	Enhancers	NHLF	lung
7	chr10:4692400-4694800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:4692600-4695600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:4693000-4695400	Weak transcription	Fetal Kidney	kidney
10	chr10:4693000-4703000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:4693000-4703600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:4693000-4703600	Weak transcription	Right Atrium	heart
13	chr10:4693200-4695400	Weak transcription	Lung	lung
14	chr10:4693200-4697200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:4693200-4697200	Weak transcription	Fetal Muscle Leg	muscle
16	chr10:4693200-4697200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:4693200-4697400	Weak transcription	Osteobl	bone
18	chr10:4693200-4697600	Weak transcription	Adipose Nuclei	Adipose
19	chr10:4693200-4699000	Weak transcription	HSMM	muscle
20	chr10:4693200-4702400	Weak transcription	Psoas Muscle	Psoas
21	chr10:4693200-4702400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:4693200-4703000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:4693200-4703000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:4693200-4703800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:4693200-4703800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:4693200-4703800	Weak transcription	Pancreas	Pancrea
27	chr10:4693400-4698400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:4693800-4694800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:4693800-4695000	Genic enhancers	NHEK	skin
30	chr10:4694000-4695000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:4694000-4695000	Enhancers	HMEC	breast
32	chr10:4694200-4694800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr10:4694200-4694800	Enhancers	Esophagus	oesophagus
34	chr10:4694200-4694800	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr10:4694200-4694800	Enhancers	Gastric	stomach
36	chr10:4694200-4694800	Enhancers	GM12878-XiMat	blood
37	chr10:4694200-4695000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:4694200-4695000	Enhancers	Primary T cells fromperipheralblood	blood
39	chr10:4694200-4695000	Enhancers	Stomach Mucosa	stomach
40	chr10:4694200-4695200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:4694200-4695600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:4694200-4696200	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr10:4694400-4694800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
44	chr10:4694400-4695000	Enhancers	Liver	Liver
45	chr10:4694400-4696000	Strong transcription	HUVEC	blood vessel
46	chr10:4694600-4694800	Enhancers	Small Intestine	intestine
47	chr10:4694600-4703800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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