Variant report

Variant	rs74121888
Chromosome Location	chr10:22980295-22980296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22979232..22981528-chr10:23001469..23003745,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16922601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922612	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2032025	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2032026	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2032027	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58854363	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7078735	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74121869	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74121889	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs74121890	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22970600-22989000	Weak transcription	Esophagus	oesophagus
2	chr10:22972600-22983600	Enhancers	Brain Substantia Nigra	brain
3	chr10:22972600-23000200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr10:22972800-22990000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:22972800-22999400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr10:22973000-22988200	Weak transcription	Aorta	Aorta
7	chr10:22973000-22990000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:22973000-22997600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:22973000-22999200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr10:22973200-22981600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:22973200-22987400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr10:22973200-22989400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr10:22973800-22985800	Weak transcription	Fetal Heart	heart
14	chr10:22974000-22985400	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:22974600-22980600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr10:22974600-22982600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr10:22974800-22981000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:22974800-22981200	Weak transcription	Right Atrium	heart
19	chr10:22974800-22988200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:22974800-22988400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:22975000-22982600	Weak transcription	Gastric	stomach
22	chr10:22975600-23001200	Weak transcription	Colonic Mucosa	Colon
23	chr10:22976000-22984000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr10:22976000-22984400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:22976000-22989000	Weak transcription	Thymus	Thymus
26	chr10:22977200-22998400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:22977600-22999200	Weak transcription	Dnd41	blood
28	chr10:22977800-22981000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:22978200-22980800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr10:22978200-22988200	Weak transcription	Left Ventricle	heart
31	chr10:22978400-22980400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:22978400-22980400	Enhancers	Brain Cingulate Gyrus	brain
33	chr10:22978400-22981000	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr10:22978600-22983000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr10:22978600-22983400	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr10:22978800-22981200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr10:22978800-22981600	Enhancers	Primary T cells from cord blood	blood
38	chr10:22978800-22982400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:22979200-22980600	Enhancers	A549	lung
40	chr10:22979400-22980400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:22979400-22980400	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr10:22979400-22980400	Enhancers	Liver	Liver
43	chr10:22979400-22980400	Enhancers	NHDF-Ad	bronchial
44	chr10:22979400-22980600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr10:22979400-22980600	Enhancers	Primary hematopoietic stem cells	blood
46	chr10:22979400-22980800	Enhancers	HepG2	liver
47	chr10:22979400-22983400	Enhancers	Brain Angular Gyrus	brain
48	chr10:22979400-22984800	Enhancers	Brain Hippocampus Middle	brain
49	chr10:22979600-22980400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr10:22979600-22980400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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