Variant report

Variant	rs74122926
Chromosome Location	chr10:25302356-25302357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56003744	1.00[AMR][1000 genomes]
rs74122924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74122925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74122927	1.00[AMR][1000 genomes]
rs74122936	0.85[AFR][1000 genomes]
rs74122941	0.85[AFR][1000 genomes]
rs74122942	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418576	chr10:25295995-25311122	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25300200-25304800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:25301400-25303000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25301400-25303000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:25301600-25304200	Weak transcription	A549	lung
5	chr10:25301800-25303200	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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