Variant report

Variant	rs74123697
Chromosome Location	chr10:25465813-25465814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr10:25465410-25466044	H1-hESC	embryonic stem cell:	n/a	chr10:25465787-25465799
2	CTCF	chr10:25465720-25465870	HCM	heart:	n/a	n/a
3	RAD21	chr10:25465641-25466035	H1-hESC	embryonic stem cell:	n/a	chr10:25465787-25465799
4	SIN3A	chr10:25463296-25466169	H1-hESC	embryonic stem cell:	n/a	chr10:25463542-25463555 chr10:25463418-25463429
5	RAD21	chr10:25465474-25466019	H1-hESC	embryonic stem cell:	n/a	chr10:25465787-25465799
6	POLR2A	chr10:25464312-25465977	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
GPR158-AS1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12265296	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12265550	0.86[AMR][1000 genomes]
rs7086178	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7902783	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv894971	chr10:25403234-25522280	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25462800-25466400	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr10:25463000-25466200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr10:25463200-25466000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr10:25463200-25466400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr10:25463400-25466400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr10:25464200-25466000	Bivalent Enhancer	Liver	Liver
7	chr10:25464200-25466000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
8	chr10:25464200-25466000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
9	chr10:25464400-25466200	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:25464600-25467600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:25464800-25466600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
12	chr10:25464800-25467400	Active TSS	Brain Angular Gyrus	brain
13	chr10:25465000-25466000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:25465000-25466200	Active TSS	H9 Cell Line	embryonic stem cell
15	chr10:25465000-25466200	Active TSS	Brain Substantia Nigra	brain
16	chr10:25465200-25466200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
17	chr10:25465200-25466200	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:25465200-25467800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:25465400-25466000	Enhancers	Pancreas	Pancrea
20	chr10:25465400-25467400	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr10:25465600-25466000	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:25465600-25466000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:25465600-25466000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
24	chr10:25465800-25466000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:25465800-25466000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:25465800-25466000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:25465800-25466000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr10:25465800-25466000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
29	chr10:25465800-25466000	Bivalent Enhancer	Fetal Stomach	stomach
30	chr10:25465800-25466200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
31	chr10:25465800-25466200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
32	chr10:25465800-25466200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
33	chr10:25465800-25466200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
34	chr10:25465800-25466200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:25465800-25466400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:25465800-25466400	Bivalent Enhancer	Fetal Brain Male	brain
37	chr10:25465800-25467600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

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