Variant report

Variant	rs74123804
Chromosome Location	chr1:171923043-171923044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs74126542	1.00[AMR][1000 genomes]
rs74126543	1.00[AMR][1000 genomes]
rs74126544	1.00[AMR][1000 genomes]
rs74126545	1.00[AMR][1000 genomes]
rs74126546	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv831893	chr1:171802450-171985000	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171906600-171923200	Weak transcription	Fetal Kidney	kidney
2	chr1:171909800-171923200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:171916200-171929200	Weak transcription	Pancreas	Pancrea
4	chr1:171922000-171923200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:171922200-171927600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:171922400-171924000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr1:171923000-171923200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:171923000-171923200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:171923000-171923600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr1:171923000-171923800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr1:171923000-171923800	Enhancers	Brain Anterior Caudate	brain
12	chr1:171923000-171923800	Enhancers	Fetal Brain Male	brain
13	chr1:171923000-171924000	Enhancers	Brain Angular Gyrus	brain
14	chr1:171923000-171924200	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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