Variant report

Variant	rs74126544
Chromosome Location	chr1:171902969-171902970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs74123804	1.00[AMR][1000 genomes]
rs74126542	1.00[AMR][1000 genomes]
rs74126543	1.00[AMR][1000 genomes]
rs74126545	1.00[AMR][1000 genomes]
rs74126546	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv831893	chr1:171802450-171985000	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171879800-171908000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:171884200-171903400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:171899800-171905200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:171900000-171916200	Weak transcription	Lung	lung
5	chr1:171900200-171905800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:171900400-171903600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:171901800-171904000	Enhancers	Brain Substantia Nigra	brain
8	chr1:171902000-171903000	Enhancers	Brain Hippocampus Middle	brain
9	chr1:171902000-171903000	Enhancers	Stomach Mucosa	stomach
10	chr1:171902400-171903200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:171902600-171903000	Enhancers	Gastric	stomach
12	chr1:171902600-171903800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr1:171902800-171903000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr1:171902800-171903000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:171902800-171903200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr1:171902800-171903200	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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