Variant report

Variant	rs74123822
Chromosome Location	chr10:25608299-25608300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25606928..25608702-chr10:25636326..25639003,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1413400	0.87[ASN][1000 genomes]
rs1416993	0.87[ASN][1000 genomes]
rs1416994	0.87[ASN][1000 genomes]
rs16925561	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55801305	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56084254	0.90[ASN][1000 genomes]
rs56257605	0.90[ASN][1000 genomes]
rs58585465	0.87[ASN][1000 genomes]
rs58942965	0.87[ASN][1000 genomes]
rs58968345	0.84[ASN][1000 genomes]
rs59521850	0.87[ASN][1000 genomes]
rs60268096	0.87[ASN][1000 genomes]
rs60352386	0.84[ASN][1000 genomes]
rs60876342	0.84[ASN][1000 genomes]
rs61082972	0.87[ASN][1000 genomes]
rs61105987	0.90[ASN][1000 genomes]
rs61108946	0.87[ASN][1000 genomes]
rs61271645	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61530525	0.87[ASN][1000 genomes]
rs66463292	0.87[ASN][1000 genomes]
rs66539540	0.87[ASN][1000 genomes]
rs66810403	0.87[ASN][1000 genomes]
rs66924755	0.90[ASN][1000 genomes]
rs66963587	0.87[ASN][1000 genomes]
rs67069034	0.87[ASN][1000 genomes]
rs67389824	0.87[ASN][1000 genomes]
rs67675896	0.87[ASN][1000 genomes]
rs67709672	0.87[ASN][1000 genomes]
rs67733590	0.87[ASN][1000 genomes]
rs67963266	0.90[ASN][1000 genomes]
rs67969515	0.90[ASN][1000 genomes]
rs68159928	0.87[ASN][1000 genomes]
rs7093650	0.87[ASN][1000 genomes]
rs7093651	0.87[ASN][1000 genomes]
rs7093692	0.87[ASN][1000 genomes]
rs72792092	0.87[ASN][1000 genomes]
rs72794261	0.82[ASN][1000 genomes]
rs73608266	0.87[ASN][1000 genomes]
rs73608267	0.82[ASN][1000 genomes]
rs74123863	0.83[ASN][1000 genomes]
rs7476751	0.87[ASN][1000 genomes]
rs7904501	0.87[ASN][1000 genomes]
rs9663151	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25607400-25608400	Enhancers	A549	lung
2	chr10:25607400-25611400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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