Variant report
Variant | rs16925561 |
---|---|
Chromosome Location | chr10:25616383-25616384 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10508692 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
rs1413400 | 0.90[ASN][1000 genomes] |
rs1416993 | 0.90[ASN][1000 genomes] |
rs1416994 | 0.90[ASN][1000 genomes] |
rs1931291 | 0.89[JPT][hapmap] |
rs2009148 | 0.89[JPT][hapmap] |
rs2225259 | 0.89[JPT][hapmap] |
rs2480345 | 0.88[JPT][hapmap] |
rs2483702 | 0.88[JPT][hapmap] |
rs4749023 | 0.88[JPT][hapmap] |
rs55801305 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs56084254 | 0.93[ASN][1000 genomes] |
rs56257605 | 0.93[ASN][1000 genomes] |
rs58585465 | 0.90[ASN][1000 genomes] |
rs58942965 | 0.90[ASN][1000 genomes] |
rs58968345 | 0.98[ASN][1000 genomes] |
rs59521850 | 0.90[ASN][1000 genomes] |
rs60268096 | 0.90[ASN][1000 genomes] |
rs60352386 | 0.87[ASN][1000 genomes] |
rs60876342 | 0.98[ASN][1000 genomes] |
rs61082972 | 0.90[ASN][1000 genomes] |
rs61105987 | 0.93[ASN][1000 genomes] |
rs61108946 | 0.90[ASN][1000 genomes] |
rs61271645 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs61530525 | 0.90[ASN][1000 genomes] |
rs66463292 | 0.90[ASN][1000 genomes] |
rs66539540 | 0.90[ASN][1000 genomes] |
rs66810403 | 0.90[ASN][1000 genomes] |
rs66924755 | 0.93[ASN][1000 genomes] |
rs66963587 | 0.90[ASN][1000 genomes] |
rs67069034 | 0.90[ASN][1000 genomes] |
rs67389824 | 0.90[ASN][1000 genomes] |
rs67675896 | 0.90[ASN][1000 genomes] |
rs67709672 | 0.96[ASN][1000 genomes] |
rs67733590 | 0.90[ASN][1000 genomes] |
rs67963266 | 0.93[ASN][1000 genomes] |
rs67969515 | 0.93[ASN][1000 genomes] |
rs68159928 | 0.90[ASN][1000 genomes] |
rs7093650 | 0.90[ASN][1000 genomes] |
rs7093651 | 0.90[ASN][1000 genomes] |
rs7093692 | 0.90[ASN][1000 genomes] |
rs72792092 | 0.90[ASN][1000 genomes] |
rs72794261 | 0.84[ASN][1000 genomes] |
rs73608266 | 0.90[ASN][1000 genomes] |
rs73608267 | 0.84[ASN][1000 genomes] |
rs74123822 | 0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs74123863 | 0.97[ASN][1000 genomes] |
rs74126521 | 0.93[ASN][1000 genomes] |
rs7476751 | 0.90[ASN][1000 genomes] |
rs7900231 | 1.00[CHB][hapmap] |
rs7904501 | 0.90[ASN][1000 genomes] |
rs7918180 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap] |
rs824600 | 0.88[JPT][hapmap] |
rs959751 | 0.88[JPT][hapmap] |
rs959752 | 0.89[JPT][hapmap] |
rs9663151 | 0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2761583 | chr10:25525657-25722444 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
2 | esv3349863 | chr10:25614571-25946379 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:25616000-25616600 | Enhancers | Pancreatic Islets | Pancreatic Islet |
2 | chr10:25616200-25616400 | Enhancers | ES-I3 Cell Line | embryonic stem cell |