Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10508692	0.88[JPT][hapmap]
rs10764548	0.80[MEX][hapmap];0.81[MKK][hapmap]
rs10828800	0.80[MEX][hapmap];0.81[MKK][hapmap]
rs1361633	0.83[AMR][1000 genomes]
rs1612726	0.80[MEX][hapmap]
rs16925561	0.88[JPT][hapmap]
rs1754248	0.80[MEX][hapmap];0.81[MKK][hapmap];0.80[AMR][1000 genomes]
rs1754277	0.83[AMR][1000 genomes]
rs1754281	0.80[MEX][hapmap]
rs1760712	0.81[ASN][1000 genomes]
rs1773658	0.80[MEX][hapmap];0.81[MKK][hapmap];0.82[AMR][1000 genomes]
rs1773678	0.85[MKK][hapmap]
rs1773682	0.80[MEX][hapmap];0.81[MKK][hapmap]
rs1773688	0.83[AMR][1000 genomes]
rs1931291	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs2009148	1.00[JPT][hapmap]
rs2225259	1.00[JPT][hapmap]
rs2483702	1.00[JPT][hapmap]
rs3949311	0.80[MEX][hapmap];0.81[MKK][hapmap]
rs4749022	0.80[MEX][hapmap];0.81[MKK][hapmap]
rs4749023	1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[YRI][hapmap]
rs7081326	0.83[AMR][1000 genomes]
rs7097708	0.83[AMR][1000 genomes]
rs7392687	0.80[MEX][hapmap];0.81[MKK][hapmap]
rs7918180	1.00[JPT][hapmap]
rs824600	0.83[ASW][hapmap];1.00[CEU][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs956086	0.80[MEX][hapmap]
rs959751	1.00[JPT][hapmap]
rs959752	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25699400-25701400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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