Variant report

Variant	rs2225259
Chromosome Location	chr10:25650502-25650503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10508692	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs16925561	0.89[JPT][hapmap]
rs1931291	1.00[JPT][hapmap]
rs2009148	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2480345	1.00[JPT][hapmap]
rs2483702	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2887084	0.83[ASN][1000 genomes]
rs4749023	1.00[JPT][hapmap]
rs72798044	0.83[ASN][1000 genomes]
rs7918180	1.00[JPT][hapmap]
rs824600	1.00[JPT][hapmap]
rs959751	0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs959752	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3342880	chr10:25644995-25682820	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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