Variant report

Variant	rs74124070
Chromosome Location	chr1:172345555-172345556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172345198..172346938-chr1:172350887..172353536,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIGC-2	chr1:172345271-172345570	NONHSAT007610

rs_ID	r²[population]
rs16844378	1.00[EUR][1000 genomes]
rs56178710	1.00[EUR][1000 genomes]
rs56214947	1.00[EUR][1000 genomes]
rs58520596	1.00[EUR][1000 genomes]
rs74124060	1.00[EUR][1000 genomes]
rs74124067	1.00[EUR][1000 genomes]
rs74124069	1.00[EUR][1000 genomes]
rs74126213	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126215	1.00[EUR][1000 genomes]
rs74126216	1.00[EUR][1000 genomes]
rs7517736	1.00[EUR][1000 genomes]
rs7524141	1.00[EUR][1000 genomes]
rs7538342	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172331200-172347200	Weak transcription	Fetal Kidney	kidney
2	chr1:172339200-172345600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:172343400-172346200	Enhancers	Primary T cells from cord blood	blood
4	chr1:172343600-172345600	Weak transcription	NHEK	skin
5	chr1:172343600-172349600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:172343600-172352200	Weak transcription	HSMM	muscle
7	chr1:172343600-172359800	Weak transcription	Brain Angular Gyrus	brain
8	chr1:172344000-172346200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:172344400-172345600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:172344400-172345800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr1:172344400-172346200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:172344400-172346400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr1:172344600-172345600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:172344600-172345600	Weak transcription	HMEC	breast
15	chr1:172344600-172346200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:172344600-172348800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr1:172344600-172349600	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:172344800-172347000	Weak transcription	Brain Substantia Nigra	brain
19	chr1:172344800-172352400	Weak transcription	Brain Anterior Caudate	brain
20	chr1:172344800-172357800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr1:172344800-172359000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr1:172345200-172345800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:172345400-172345800	Active TSS	Primary B cells from peripheral blood	blood
24	chr1:172345400-172346000	Enhancers	Primary T helper cells fromperipheralblood	blood

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