The 2.0 version of rSNPBase

Variant report

Variant rs74126216
Chromosome Location chr1:172391859-172391860
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172373000-172411800 Weak transcription Brain Angular Gyrus brain
2 chr1:172384400-172398400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr1:172385800-172411000 Weak transcription Fetal Stomach stomach
4 chr1:172387200-172392200 Enhancers Primary T cells from cord blood blood
5 chr1:172387600-172392400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr1:172387600-172392400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr1:172388600-172392200 Weak transcription NHEK skin
8 chr1:172388800-172392200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:172388800-172392200 Weak transcription HMEC breast
10 chr1:172390400-172395600 Weak transcription Primary T helper naive cells from peripheral blood blood
11 chr1:172390600-172395600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
12 chr1:172390800-172392000 Enhancers Brain Cingulate Gyrus brain
13 chr1:172390800-172392000 Enhancers Brain Inferior Temporal Lobe brain
14 chr1:172390800-172392000 Enhancers Brain Substantia Nigra brain
15 chr1:172390800-172392200 Enhancers Brain Hippocampus Middle brain
16 chr1:172390800-172392200 Enhancers Psoas Muscle Psoas
17 chr1:172391000-172392200 Enhancers Left Ventricle heart
18 chr1:172391000-172410600 Weak transcription HUES48 Cell Line embryonic stem cell
19 chr1:172391000-172412200 Weak transcription HSMMtube muscle
20 chr1:172391200-172392000 Enhancers Lung lung
21 chr1:172391200-172392400 Enhancers Breast Myoepithelial Primary Cells Breast
22 chr1:172391200-172392400 Enhancers Right Atrium heart
23 chr1:172391200-172395200 Weak transcription iPS-20b Cell Line embryonic stem cell
24 chr1:172391200-172395400 Weak transcription iPS-18 Cell Line embryonic stem cell
25 chr1:172391200-172395800 Weak transcription Primary T cells fromperipheralblood blood
26 chr1:172391200-172395800 Weak transcription Primary T killer memory cells from peripheral blood blood
27 chr1:172391400-172394200 Weak transcription K562 blood
28 chr1:172391400-172395200 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr1:172391400-172395200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr1:172391400-172395400 Weak transcription Primary T helper cells PMA-I stimulated --
31 chr1:172391400-172396000 Weak transcription Primary T helper cells fromperipheralblood blood
32 chr1:172391400-172398000 Weak transcription HUES6 Cell Line embryonic stem cell
33 chr1:172391400-172400800 Weak transcription Pancreas Pancrea
34 chr1:172391400-172409400 Weak transcription Fetal Muscle Trunk muscle
35 chr1:172391600-172392200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
36 chr1:172391600-172392200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
37 chr1:172391600-172392400 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr1:172391600-172393400 Weak transcription Colon Smooth Muscle Colon
39 chr1:172391600-172394600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
40 chr1:172391600-172394600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr1:172391600-172395200 Weak transcription ES-I3 Cell Line embryonic stem cell
42 chr1:172391600-172395200 Weak transcription iPS-15b Cell Line embryonic stem cell
43 chr1:172391600-172396000 Weak transcription Fetal Thymus thymus
44 chr1:172391800-172392000 Enhancers Right Ventricle heart
45 chr1:172391800-172394600 Weak transcription Primary T helper naive cells fromperipheralblood blood
46 chr1:172391800-172396400 Weak transcription Fetal Lung lung
47 chr1:172391800-172411000 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015