Variant report

Variant	rs74124941
Chromosome Location	chr1:150588009-150588010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150543642..150545689-chr1:150586263..150588774,2	MCF-7	breast:
2	chr1:150584201..150586681-chr1:150587631..150590116,2	MCF-7	breast:
3	chr1:150575575..150579360-chr1:150586267..150590184,5	MCF-7	breast:
4	chr1:150538995..150557554-chr1:150581886..150604495,126	K562	blood:
5	chr1:150540599..150543052-chr1:150586269..150588685,3	K562	blood:
6	chr1:150583951..150586668-chr1:150586711..150588335,2	K562	blood:
7	chr1:150533573..150536224-chr1:150587960..150590660,2	K562	blood:
8	chr1:150544073..150554289-chr1:150582699..150598712,61	K562	blood:

No data

Variant related genes	Relation type
ENSG00000264584	Chromatin interaction
ENSG00000264508	Chromatin interaction
ENSG00000143384	Chromatin interaction
ENSG00000203804	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61820168	0.91[AFR][1000 genomes]
rs74124944	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74124966	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150553200-150592000	Weak transcription	Fetal Kidney	kidney
2	chr1:150576200-150591000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:150577000-150588400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:150578000-150592600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:150582200-150588800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:150582400-150588800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr1:150582400-150594400	Weak transcription	Ovary	ovary
8	chr1:150582600-150591800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:150583200-150589000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr1:150583400-150588200	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr1:150584000-150588600	Strong transcription	Fetal Brain Female	brain
12	chr1:150584400-150588600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr1:150584400-150594800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:150584400-150600600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:150584600-150588200	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr1:150584600-150589400	Weak transcription	Brain Anterior Caudate	brain
17	chr1:150584800-150589600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr1:150584800-150591400	Weak transcription	Right Ventricle	heart
19	chr1:150584800-150591600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:150584800-150594400	Weak transcription	Gastric	stomach
21	chr1:150584800-150596200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:150584800-150600200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:150585000-150600000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr1:150585200-150600200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr1:150585400-150594200	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr1:150585600-150588800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr1:150585600-150589200	Enhancers	Primary T cells fromperipheralblood	blood
28	chr1:150585600-150589200	Enhancers	Small Intestine	intestine
29	chr1:150585600-150591600	Weak transcription	Psoas Muscle	Psoas
30	chr1:150586200-150589400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr1:150586200-150591800	Weak transcription	Colon Smooth Muscle	Colon
32	chr1:150586200-150594600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr1:150586400-150588600	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr1:150586400-150589000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr1:150586400-150592200	Weak transcription	Aorta	Aorta
36	chr1:150586400-150592200	Weak transcription	Brain Substantia Nigra	brain
37	chr1:150586600-150588200	Enhancers	HMEC	breast
38	chr1:150586600-150588600	Enhancers	Primary hematopoietic stem cells	blood
39	chr1:150586600-150588600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr1:150586600-150590000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr1:150586600-150591800	Weak transcription	Brain Angular Gyrus	brain
42	chr1:150586600-150591800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr1:150586600-150592000	Strong transcription	Fetal Stomach	stomach
44	chr1:150586600-150592600	Weak transcription	Right Atrium	heart
45	chr1:150586600-150600400	Strong transcription	Fetal Muscle Trunk	muscle
46	chr1:150586800-150588200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr1:150586800-150588200	Enhancers	Hela-S3	cervix
48	chr1:150586800-150588400	Genic enhancers	NHEK	skin
49	chr1:150586800-150590000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:150586800-150591600	Weak transcription	HSMM	muscle

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