Variant report

Variant	rs74124944
Chromosome Location	chr1:150603752-150603753
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr1:150602980-150604074	K562	blood:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150549047..150553046-chr1:150599453..150603954,9	MCF-7	breast:
2	chr1:150600620..150604710-chr1:150667156..150670884,6	K562	blood:
3	chr1:150600086..150604497-chr1:150798595..150803015,4	MCF-7	breast:
4	chr1:150538995..150557554-chr1:150581886..150604495,126	K562	blood:
5	chr1:150458113..150460742-chr1:150599904..150603804,4	MCF-7	breast:
6	chr1:150532182..150537720-chr1:150588719..150604935,28	MCF-7	breast:
7	chr1:150548752..150555486-chr1:150599368..150605834,15	MCF-7	breast:
8	chr1:150523106..150526873-chr1:150601148..150603781,4	K562	blood:
9	chr1:150547986..150553838-chr1:150598744..150606232,19	K562	blood:
10	chr1:150602761..150604761-chr1:150618641..150620910,2	MCF-7	breast:
11	chr1:150602963..150605851-chr1:150608537..150610642,4	K562	blood:
12	chr1:150531290..150540028-chr1:150591374..150603951,29	MCF-7	breast:
13	chr1:150526992..150529114-chr1:150602291..150603866,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ADAMTSL4-7	chr1:150602100-150609632	NONHSAT006322

No data

Variant related genes	Relation type
ENSA	TF binding region
ENSG00000143457	Chromatin interaction
ENSG00000143437	Chromatin interaction
ENSG00000143384	Chromatin interaction
ENSG00000264553	Chromatin interaction
ENSG00000203804	Chromatin interaction
ENSG00000143374	Chromatin interaction
ENSG00000143382	Chromatin interaction
ENSG00000264584	Chromatin interaction
ENSG00000264508	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61820168	0.91[AFR][1000 genomes]
rs74124941	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74124966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150600400-150603800	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr1:150600600-150604200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr1:150600800-150603800	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr1:150601000-150604000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr1:150601200-150604400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:150602600-150607200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:150602600-150608000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:150603000-150603800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:150603000-150603800	Flanking Active TSS	K562	blood
10	chr1:150603000-150607800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr1:150603000-150608000	Weak transcription	Fetal Intestine Large	intestine
12	chr1:150603000-150608200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:150603000-150619000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:150603000-150619600	Weak transcription	Small Intestine	intestine
15	chr1:150603200-150603800	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr1:150603200-150603800	Enhancers	Colon Smooth Muscle	Colon
17	chr1:150603200-150603800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr1:150603200-150604200	Enhancers	Right Atrium	heart
19	chr1:150603200-150604600	Weak transcription	Fetal Heart	heart
20	chr1:150603200-150607200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr1:150603200-150607200	Weak transcription	HepG2	liver
22	chr1:150603200-150607600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr1:150603200-150607600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:150603200-150607600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr1:150603200-150607800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr1:150603200-150608000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr1:150603200-150608200	Weak transcription	Stomach Mucosa	stomach
28	chr1:150603200-150608200	Weak transcription	Hela-S3	cervix
29	chr1:150603200-150616600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr1:150603200-150617400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr1:150603200-150618600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr1:150603200-150619600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr1:150603200-150619600	Weak transcription	Fetal Intestine Small	intestine
34	chr1:150603200-150619600	Weak transcription	Fetal Stomach	stomach
35	chr1:150603200-150619800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr1:150603200-150620000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr1:150603200-150620000	Weak transcription	Gastric	stomach
38	chr1:150603200-150620000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr1:150603200-150620600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr1:150603200-150620600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr1:150603200-150661200	Weak transcription	Brain Substantia Nigra	brain
42	chr1:150603400-150603800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
43	chr1:150603400-150604000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr1:150603400-150604200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr1:150603400-150604200	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr1:150603400-150604400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr1:150603400-150606600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr1:150603400-150607200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr1:150603400-150607200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr1:150603400-150608000	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links