Variant report

Variant	rs74126905
Chromosome Location	chr1:175095574-175095575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs41266092	0.91[EUR][1000 genomes]
rs60694086	0.91[EUR][1000 genomes]
rs6664308	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6664418	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6703136	0.91[EUR][1000 genomes]
rs74126907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126919	0.91[EUR][1000 genomes]
rs74126922	0.91[EUR][1000 genomes]
rs74126923	0.91[EUR][1000 genomes]
rs7547349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825487	chr1:175031609-175113572	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv508648	chr1:175056387-175121913	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175084600-175095600	Weak transcription	Right Atrium	heart
2	chr1:175084800-175097000	Weak transcription	Gastric	stomach
3	chr1:175086400-175099600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:175091200-175098600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:175093200-175095600	Weak transcription	Lung	lung
6	chr1:175093400-175095600	Weak transcription	Spleen	Spleen
7	chr1:175093800-175096200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:175094000-175100000	Enhancers	Liver	Liver
9	chr1:175094400-175098400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:175094400-175098800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:175094600-175095600	Weak transcription	Fetal Lung	lung
12	chr1:175094600-175095600	Weak transcription	Fetal Stomach	stomach
13	chr1:175094600-175096800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:175094800-175096000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:175094800-175096600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr1:175094800-175096800	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr1:175095200-175096600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr1:175095400-175096000	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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