Variant report

Variant	rs74126923
Chromosome Location	chr1:175123218-175123219
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:175123069..175124833-chr1:175288206..175289868,26	MCF-7	breast:
2	chr1:175122415..175124453-chr1:175287912..175290526,2	MCF-7	breast:
3	chr1:175122852..175126073-chr1:175286636..175289998,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs41266092	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60694086	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6664308	0.91[EUR][1000 genomes]
rs6664418	0.91[EUR][1000 genomes]
rs6703136	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126905	0.91[EUR][1000 genomes]
rs74126907	0.91[EUR][1000 genomes]
rs74126914	0.91[EUR][1000 genomes]
rs74126915	0.91[EUR][1000 genomes]
rs74126919	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74126922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126924	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74126925	1.00[ASN][1000 genomes]
rs74126926	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74126927	0.94[ASN][1000 genomes]
rs7547349	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522101	chr1:175109517-175151183	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv429924	chr1:175110480-175134314	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175110200-175127400	Weak transcription	Left Ventricle	heart
2	chr1:175115000-175125000	Weak transcription	Right Atrium	heart
3	chr1:175120000-175139400	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:175120200-175127600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr1:175121400-175127600	Weak transcription	Spleen	Spleen
6	chr1:175121600-175127200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:175121600-175128400	Weak transcription	Ovary	ovary
8	chr1:175121600-175130800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:175121800-175124000	Weak transcription	Liver	Liver
10	chr1:175121800-175131200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:175122000-175128200	Weak transcription	Gastric	stomach
12	chr1:175122200-175132800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr1:175122200-175133400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:175122200-175136600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:175122400-175129400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr1:175122800-175127200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:175122800-175128200	Weak transcription	Aorta	Aorta
18	chr1:175123200-175123400	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:175123200-175124600	Weak transcription	Placenta	Placenta
20	chr1:175123200-175124800	Weak transcription	Right Ventricle	heart
21	chr1:175123200-175127400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:175123200-175129600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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