Variant report

Variant	rs74126925
Chromosome Location	chr1:175125280-175125281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:175122852..175126073-chr1:175286636..175289998,3	MCF-7	breast:
2	chr1:175124723..175127210-chr1:175127837..175131491,4	MCF-7	breast:
3	chr1:175124748..175125505-chr1:175286496..175287012,2	K562	blood:
4	chr1:175123305..175125739-chr1:175288454..175289454,12	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs41266092	1.00[ASN][1000 genomes]
rs60694086	0.81[ASN][1000 genomes]
rs6703136	1.00[ASN][1000 genomes]
rs74126919	0.94[ASN][1000 genomes]
rs74126922	1.00[ASN][1000 genomes]
rs74126923	1.00[ASN][1000 genomes]
rs74126924	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126926	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522101	chr1:175109517-175151183	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv429924	chr1:175110480-175134314	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175110200-175127400	Weak transcription	Left Ventricle	heart
2	chr1:175120000-175139400	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:175120200-175127600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:175121400-175127600	Weak transcription	Spleen	Spleen
5	chr1:175121600-175127200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:175121600-175128400	Weak transcription	Ovary	ovary
7	chr1:175121600-175130800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:175121800-175131200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:175122000-175128200	Weak transcription	Gastric	stomach
10	chr1:175122200-175132800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:175122200-175133400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr1:175122200-175136600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:175122400-175129400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:175122800-175127200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:175122800-175128200	Weak transcription	Aorta	Aorta
16	chr1:175123200-175127400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:175123200-175129600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr1:175123600-175125800	Enhancers	Primary B cells from peripheral blood	blood
19	chr1:175123600-175127400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr1:175123800-175125600	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr1:175123800-175129400	Weak transcription	Fetal Intestine Small	intestine
22	chr1:175124000-175125600	Enhancers	Primary T cells fromperipheralblood	blood
23	chr1:175124000-175125600	Enhancers	Liver	Liver
24	chr1:175124000-175126800	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr1:175124000-175129000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr1:175124000-175140400	Weak transcription	Fetal Heart	heart
27	chr1:175124200-175125400	Enhancers	Primary B cells from cord blood	blood
28	chr1:175124200-175125600	Enhancers	Adipose Nuclei	Adipose
29	chr1:175124200-175129200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr1:175124400-175127400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr1:175124400-175128000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr1:175124400-175128200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr1:175124400-175128200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr1:175124400-175128400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:175124400-175128400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:175124400-175138200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr1:175124600-175125600	Enhancers	Placenta	Placenta
38	chr1:175124600-175127200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr1:175124600-175127200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr1:175124600-175128400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr1:175124600-175134600	Weak transcription	Small Intestine	intestine
42	chr1:175124800-175125400	Enhancers	Right Ventricle	heart
43	chr1:175124800-175126400	Weak transcription	HMEC	breast
44	chr1:175124800-175127600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr1:175124800-175128200	Weak transcription	Primary T cells from cord blood	blood
46	chr1:175124800-175128800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr1:175125000-175125800	Enhancers	Pancreas	Pancrea
48	chr1:175125000-175127000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr1:175125000-175127000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr1:175125000-175127000	Weak transcription	Thymus	Thymus

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