Variant report

Variant	rs74126975
Chromosome Location	chr1:175284449-175284450
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55668306	0.83[AFR][1000 genomes]
rs59320754	1.00[AMR][1000 genomes]
rs859397	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv831948	chr1:175229631-175407303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175277600-175288200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr1:175283200-175320600	Weak transcription	Brain Germinal Matrix	brain
3	chr1:175283600-175285200	Weak transcription	Placenta	Placenta
4	chr1:175283600-175288400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:175283800-175286200	Weak transcription	Adipose Nuclei	Adipose
6	chr1:175283800-175286600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:175283800-175286600	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:175283800-175286600	Weak transcription	Pancreas	Pancrea
9	chr1:175283800-175286800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr1:175283800-175287200	Weak transcription	Right Atrium	heart
11	chr1:175283800-175287800	Weak transcription	Left Ventricle	heart
12	chr1:175283800-175287800	Weak transcription	Psoas Muscle	Psoas
13	chr1:175283800-175287800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:175283800-175288200	Weak transcription	HMEC	breast
15	chr1:175284000-175287600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:175284200-175287800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:175284200-175343000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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