Variant report

Variant	rs859397
Chromosome Location	chr1:175375903-175375904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2629477	1.00[AMR][1000 genomes]
rs2629478	1.00[AMR][1000 genomes]
rs2859048	1.00[AMR][1000 genomes]
rs55668306	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56113036	1.00[AMR][1000 genomes]
rs56293838	1.00[AMR][1000 genomes]
rs56363769	1.00[AMR][1000 genomes]
rs57419526	1.00[AMR][1000 genomes]
rs58765882	1.00[AMR][1000 genomes]
rs73036242	1.00[AMR][1000 genomes]
rs74126975	1.00[AFR][1000 genomes]
rs74126978	1.00[AMR][1000 genomes]
rs74126981	1.00[AMR][1000 genomes]
rs74126984	1.00[AMR][1000 genomes]
rs74126985	1.00[AMR][1000 genomes]
rs74126986	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv831948	chr1:175229631-175407303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175370000-175376200	Weak transcription	Fetal Brain Female	brain
2	chr1:175370000-175390200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:175370600-175384600	Weak transcription	Brain Angular Gyrus	brain
4	chr1:175375200-175378400	Enhancers	K562	blood
5	chr1:175375400-175376000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:175375400-175376000	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links