Variant report

Variant	rs74127314
Chromosome Location	chr10:27772770-27772771
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11015810	1.00[AFR][1000 genomes]
rs11015821	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015822	0.81[AFR][1000 genomes]
rs12242702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244699	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256731	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265154	0.81[AFR][1000 genomes]
rs1932005	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932006	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1989581	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58800730	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73604009	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73604010	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74127330	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv2750890	chr10:27669479-27774501	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27770200-27775600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:27771600-27773000	Enhancers	Esophagus	oesophagus
3	chr10:27771600-27779800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:27771800-27772800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:27771800-27773000	Flanking Active TSS	HMEC	breast
6	chr10:27771800-27773000	Flanking Active TSS	NHEK	skin
7	chr10:27772000-27773000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:27772000-27773000	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:27772200-27773800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:27772400-27772800	Enhancers	Osteobl	bone
11	chr10:27772400-27773000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:27772400-27773200	Enhancers	Stomach Smooth Muscle	stomach
13	chr10:27772600-27772800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:27772600-27772800	Enhancers	Colon Smooth Muscle	Colon
15	chr10:27772600-27777600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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