Variant report

Variant	rs11015822
Chromosome Location	chr10:27782837-27782838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27773891..27776810-chr10:27782060..27784167,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10437435	1.00[AMR][1000 genomes]
rs11015809	1.00[AMR][1000 genomes]
rs11015810	0.81[AFR][1000 genomes]
rs11015821	0.81[AFR][1000 genomes]
rs12240762	1.00[AMR][1000 genomes]
rs12242389	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12242702	0.81[AFR][1000 genomes]
rs12245719	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245917	1.00[AMR][1000 genomes]
rs12251554	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253703	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261080	1.00[AMR][1000 genomes]
rs12265154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928129	1.00[AMR][1000 genomes]
rs73604009	0.84[AFR][1000 genomes]
rs73604010	0.84[AFR][1000 genomes]
rs73604013	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604014	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604025	1.00[AMR][1000 genomes]
rs74127314	0.81[AFR][1000 genomes]
rs74127330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7923439	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27780400-27789000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:27780800-27789200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:27781200-27783400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:27782800-27783800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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