Variant report

Variant	rs11015809
Chromosome Location	chr10:27769897-27769898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10437435	1.00[AMR][1000 genomes]
rs11015822	1.00[AMR][1000 genomes]
rs12240762	1.00[AMR][1000 genomes]
rs12242389	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245719	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245917	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251554	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253703	0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261080	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265154	1.00[AMR][1000 genomes]
rs16928129	1.00[AMR][1000 genomes]
rs73604013	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604014	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604025	1.00[AMR][1000 genomes]
rs74127330	1.00[AMR][1000 genomes]
rs7923439	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv2750890	chr10:27669479-27774501	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27765200-27771800	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:27767000-27771600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:27767800-27770400	Weak transcription	HMEC	breast
4	chr10:27768400-27770200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:27769200-27772600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr10:27769400-27770000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr10:27769400-27771800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:27769400-27771800	Enhancers	NHEK	skin
9	chr10:27769400-27772000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:27769400-27772600	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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