Variant report

Variant	rs73604014
Chromosome Location	chr10:27800882-27800883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27799337..27801640-chr10:27835012..27836512,2	K562	blood:
2	chr10:27799672..27801387-chr10:27805643..27808469,2	MCF-7	breast:
3	chr10:27792936..27797096-chr10:27798053..27803515,8	K562	blood:
4	chr10:27793040..27797824-chr10:27798182..27803783,7	K562	blood:
5	chr10:27798609..27800885-chr10:27819164..27820782,2	K562	blood:
6	chr10:27800400..27804352-chr10:27805860..27809285,4	K562	blood:

Variant related genes	Relation type
ENSG00000099246	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10437435	1.00[AMR][1000 genomes]
rs11015809	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015822	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12240762	1.00[AMR][1000 genomes]
rs12242389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245917	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261080	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265154	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928129	1.00[AMR][1000 genomes]
rs73604013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604025	1.00[AMR][1000 genomes]
rs74127330	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7923439	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27794000-27801200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:27794200-27803800	Weak transcription	Lung	lung
3	chr10:27794200-27806800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:27794200-27817000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:27794400-27824000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:27794400-27837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:27794800-27802400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:27794800-27802400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:27794800-27814200	Weak transcription	Ovary	ovary
10	chr10:27794800-27814600	Weak transcription	HSMMtube	muscle
11	chr10:27794800-27822800	Weak transcription	Colonic Mucosa	Colon
12	chr10:27794800-27823200	Weak transcription	Esophagus	oesophagus
13	chr10:27794800-27823200	Weak transcription	Spleen	Spleen
14	chr10:27795000-27802800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:27795000-27806000	Weak transcription	Fetal Kidney	kidney
16	chr10:27795000-27813000	Weak transcription	Right Atrium	heart
17	chr10:27795200-27802400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:27795200-27813800	Weak transcription	Fetal Brain Male	brain
19	chr10:27795200-27816800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:27795400-27802400	Weak transcription	Fetal Brain Female	brain
21	chr10:27795600-27801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:27795600-27801400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr10:27795600-27802400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr10:27795600-27802600	Weak transcription	Brain Angular Gyrus	brain
25	chr10:27795600-27814800	Weak transcription	Pancreas	Pancrea
26	chr10:27795600-27816800	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:27795800-27801600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr10:27795800-27802600	Weak transcription	Brain Substantia Nigra	brain
29	chr10:27795800-27803000	Weak transcription	NHLF	lung
30	chr10:27795800-27803800	Weak transcription	Aorta	Aorta
31	chr10:27795800-27822600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr10:27795800-27832600	Weak transcription	Small Intestine	intestine
33	chr10:27796000-27814600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr10:27796200-27801200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:27796200-27804200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:27796400-27801600	Weak transcription	NHDF-Ad	bronchial
37	chr10:27796400-27802400	Weak transcription	HepG2	liver
38	chr10:27796400-27803400	Strong transcription	Primary B cells from peripheral blood	blood
39	chr10:27796400-27805200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:27796800-27801200	Weak transcription	Left Ventricle	heart
41	chr10:27796800-27802600	Weak transcription	Gastric	stomach
42	chr10:27796800-27804800	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr10:27798000-27804000	Strong transcription	Primary B cells from cord blood	blood
44	chr10:27798200-27801800	Strong transcription	NH-A	brain
45	chr10:27798200-27802200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr10:27798200-27802400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr10:27798400-27801400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr10:27798400-27802400	Strong transcription	Dnd41	blood
49	chr10:27798400-27802600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr10:27798400-27804200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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