Variant report

Variant	rs12240762
Chromosome Location	chr10:27847954-27847955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10437435	1.00[AMR][1000 genomes]
rs11015809	1.00[AMR][1000 genomes]
rs11015822	1.00[AMR][1000 genomes]
rs12242389	1.00[AMR][1000 genomes]
rs12245719	1.00[AMR][1000 genomes]
rs12245917	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251554	1.00[AMR][1000 genomes]
rs12253703	1.00[AMR][1000 genomes]
rs12261080	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265154	1.00[AMR][1000 genomes]
rs16928129	1.00[AMR][1000 genomes]
rs16928237	1.00[AMR][1000 genomes]
rs57040272	1.00[AMR][1000 genomes]
rs73604013	1.00[AMR][1000 genomes]
rs73604014	1.00[AMR][1000 genomes]
rs73604025	1.00[AMR][1000 genomes]
rs73604054	1.00[AMR][1000 genomes]
rs73604056	1.00[AMR][1000 genomes]
rs73604058	1.00[AMR][1000 genomes]
rs73604059	1.00[AMR][1000 genomes]
rs74127330	1.00[AMR][1000 genomes]
rs7923439	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27835200-27852600	Weak transcription	Aorta	Aorta
2	chr10:27847200-27848000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:27847400-27848000	Enhancers	Fetal Heart	heart
4	chr10:27847600-27848000	Enhancers	Colon Smooth Muscle	Colon
5	chr10:27847600-27848000	Enhancers	Fetal Muscle Leg	muscle
6	chr10:27847600-27848000	Enhancers	Osteobl	bone
7	chr10:27847600-27848400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:27847800-27848000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr10:27847800-27848000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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