Variant report

Variant	rs7923439
Chromosome Location	chr10:27952079-27952080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10437435	1.00[AMR][1000 genomes]
rs11015809	1.00[AMR][1000 genomes]
rs11015822	1.00[AMR][1000 genomes]
rs12240762	1.00[AMR][1000 genomes]
rs12242389	1.00[AMR][1000 genomes]
rs12245719	1.00[AMR][1000 genomes]
rs12245917	1.00[AMR][1000 genomes]
rs12251554	1.00[AMR][1000 genomes]
rs12253703	1.00[AMR][1000 genomes]
rs12261080	1.00[AMR][1000 genomes]
rs12265154	1.00[AMR][1000 genomes]
rs16928129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928237	1.00[AMR][1000 genomes]
rs16928267	1.00[AMR][1000 genomes]
rs57040272	1.00[AMR][1000 genomes]
rs73604013	1.00[AMR][1000 genomes]
rs73604014	1.00[AMR][1000 genomes]
rs73604025	1.00[AMR][1000 genomes]
rs73604054	1.00[AMR][1000 genomes]
rs73604056	1.00[AMR][1000 genomes]
rs73604058	1.00[AMR][1000 genomes]
rs73604059	1.00[AMR][1000 genomes]
rs73604063	1.00[AMR][1000 genomes]
rs74127330	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv894985	chr10:27869503-27957785	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv894986	chr10:27904646-27957785	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27933800-27963600	Weak transcription	Ovary	ovary
2	chr10:27941600-27963600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:27948600-27954200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:27950400-27953400	Enhancers	Hela-S3	cervix
5	chr10:27950800-27952600	Enhancers	Osteobl	bone
6	chr10:27951400-27952400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:27951800-27954000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr10:27952000-27953200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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