Variant report

Variant	rs74128553
Chromosome Location	chr1:175013628-175013629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10218557	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10218684	1.00[AMR][1000 genomes]
rs10218704	1.00[AMR][1000 genomes]
rs6425307	1.00[AMR][1000 genomes]
rs6671849	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6674318	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6678486	1.00[AMR][1000 genomes]
rs6689808	1.00[AMR][1000 genomes]
rs6703060	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011472	chr1:175013165-175042885	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv946512	chr1:175013171-175019073	Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174993200-175013800	Weak transcription	Spleen	Spleen
2	chr1:175012000-175014200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:175013000-175013800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr1:175013000-175013800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:175013000-175013800	Enhancers	Fetal Lung	lung
6	chr1:175013000-175014000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:175013000-175014000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:175013200-175013800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:175013200-175013800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:175013400-175013800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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